Table 1

Bayesian estimates of DNA substitution model parameters for CYB, GHR, and their codon positions.

CYT B

GHR


1

2

3

1

2

3


Sites

381

381

381

307

307

307


% A

36.0

33.7–38.4

28.2

25.6–31.0


30.5

20.9

42.7

27.7

34.3

20.2

26.4–34.6

17.1–25.0

38.5–46.4

23.2–32.3

29.5–39.2

16.5–24.2


% C

33.3

31.4–35.3

27.4

24.8–30.1


28.8

25.7

33.6

21.8

30.4

30.9

24.9–32.9

21.8–29.9

30.7–36.4

17.8–26.1

25.9–35.1

26.7–35.3


% G

9.2

7.8–10.6

23.0

20.5–25.1


22.2

11.7

3.8

33.4

14.6

21.2

18.4–26.1

8.8–14.9

3.1–4.7

28.7–38.4

10.9–18.4

17.4–25.3


% T

21.5

20.0–23.0

21.8

19.5–24.3


18.5

41.6

19.9

17.1

20.7

27.7

15.6–21.8

37.1–46.3

17.8–22.4

13.6–21.2

16.8–24.8

23.5–32.1


r AG

6.8

4.0–11.7

5.8

3.5–9.3


4.3

1.0

22.1

7.3

17.9

13.5

2.0–8.4

0.1–3.5

4.2–83.7

2.4–19.5

2.8–68.7

6.1–29.0


r CT

19.9

11.2–37.6

6.5

4.0–10.4


37.2

40.2

19.0

6.2

20.2

5.4

12.3–78.2

7.7–93.7

3.8–76.0

2.0–16.2

2.9–72.0

2.6–10.4


r AC

0.7

0.4–1.4

1.06

0.6–1.8


0.6

0.3

1.1

2.5

2.7

1.0

0.2–1.4

0–1.7

0.2–4.4

0.7–7.3

0.4–10.7

0.4–2.3


r AT

1.6

0.8–3.1

0.9

0.4–1.5


1.8

0.4

2.2

2.2

2.9

0.8

0.6–4.0

0.1–1.4

0.4–8.4

0.6–6.4

0.2–13.0

0.3–1.8


r CG

0.3

0.1–0.7

1.5

0.8–2.6


0.2

14.4

2.4

2.1

6.4

1.3

0–0.7

1.6–49.5

0.1–10.9

0.6–5.6

1.0–24.3

0.5–2.7


α (Γ 8)

0.17

0.16–0.19

0.48

0.41–0.53


0.14

0.05

1.22

0.05

0.05

0.22

0.12–0.17

0.05–0.06

0.96–1.54

0.05–0.05

0.05–0.06

0.18–0.27


Number of sites, base composition (%A, C, G, and T), relative GTR substitution rate parameters (r AG, CT, AC, AT, CG, standardized to r GT = 1.0), and Gamma shape parameter (Γ) are given, with mean values on first sublines, and 95% credibility intervals, italicized on second sublines. Parameter estimates are also measured for each codon position, and are recapitulated in columns 1 (first), 2 (second), and 3 (third positions).

Galewski et al. BMC Evolutionary Biology 2006 6:80   doi:10.1186/1471-2148-6-80

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