Open Access Highly Accessed Research article

ESTimating plant phylogeny: lessons from partitioning

Jose EB de la Torre1, Mary G Egan2, Manpreet S Katari1, Eric D Brenner13, Dennis W Stevenson3, Gloria M Coruzzi1 and Rob DeSalle2*

Author Affiliations

1 Department of Biology, New York University, 100 Washington Sq East, New York NY 10003, USA

2 American Museum of Natural History, Central Park West @79th St., New York, NY 10024, USA

3 New York Botanical Garden Bronx, 200th Street and Kazimiroff Boulevard, Bronx, NY 10458, USA

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BMC Evolutionary Biology 2006, 6:48  doi:10.1186/1471-2148-6-48

Published: 15 June 2006

Additional files

Additional File 1:

Accession numbers for sequences used in the analysis. Accession numbers, by partition name, used to assemble the data matrix. Database of origin is indicated before each number. In some cases, more than one EST was used (i.e. clustered) to assemble a single partition.

Format: XLS Size: 42KB Download file

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Additional File 2:

Table 2 – Data matrix used for analyses in this paper in NEXUS format. This file contains the raw data matrix of characters used in the phylogenetic analysis.

Format: NEX Size: 119KB Download file

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Additional File 3:

Table 3 – Proportion of missing characters per taxon and data partition. This file lists the proportion of missing characters used in the analysis.

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Additional File 4:

Table 4 – Pairwise analysis of congruence among individual partitions. Table showing significance scores when the Incongruence Length Difference (ILD) test was applied to pairwise comparisons among each individual partition. Statistically significant numbers (i.e. equal or smaller than 0.05), showing phylogenetic incongruence among partitions, are shaded.

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Additional File 5:

Table 5 – Key to partition names.

Format: PDF Size: 23KB Download file

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