Table 1

Location of repeats in the grape chloroplast genome. Repeats 1 to 15 are direct, and 16 to 36 are inverted. Table includes repeats at least 30 bp in size, with a sequence identity ≥ 90%. IGS = Intergenic spacer. See Figure 1 for location of repeats on the gene map. Repeats indicated by * (palindrome) and ** (tandem) are only shown once on the circular map in Figure 1.

Repeat Number

Size (bp)

Location


1

30*

IGS

2

30

ycf3 intron, IGS

3

31

IGS

4

31

TrnG-GCC

5

32

IGS (4 bp) – trnS-GCU, IGS (4 bp) – trnS-UGA

6

34**

ycf2

7

39

ycf3 intron, IGS, ndhA intron

8

40

IGS

9

41

psaB exon – psaA exon

10

42

IGS, ndhA intron

11

46**

ycf2

12

46**

ycf2

13

52**

ycf2

14

64**

ycf2

15

64**

ycf2

16

30

IGS (3 bp) – trnS-GCU, trnS-GGA

17

30*

IGS

18

30

IGS (2 bp) – trnS-UGA, trnS-GGA

19

30

ycf3 intron, IGS

20

31

IGS

21

33*

IGS

22

34

ycf2

23

34

ycf2

24

34*

ycf1

25

36*

IGS, ycf1

26

39

ycf3, IGS

27

40

IGS

28

42

ndhA intron, IGS

29

43*

IGS

30

46

Ycf2

31

46

Ycf2

32

52

Ycf2

33

52

Ycf2

34

54*

IGS

35

64

Ycf2

36

64

Ycf2


Jansen et al. BMC Evolutionary Biology 2006 6:32   doi:10.1186/1471-2148-6-32

Open Data