Table 6

Real Dataset Analysis. Results of the model selection on the specialised datasets (see the references for full descriptions of the individual datasets). Amino acid matrix expectations are based on previously published information about the sequences ([19, 54, 55] and LANL [56]).

Dataset

Source

Expected

AIC1

AIC2

BIC


mtCDNApri

Yang [54]

MtMam

MtMam+I+G

MtMam+G

MtMam+G

mtCDNAape

Yang [54]

MtMam

MtMam+F

MtMam+F

MtMam+F

70pep_nogap

Reyes et al. [55]

MtMam

MtMam+I+G+F

MtMam+I+G

MtMam+I+G

BETA

Dimmic et al. [19]

RtREV

RtREV+G+F

RtREV+G

RtREV+G

ENDO

Dimmic et al. [19]

RtREV

RtREV+I+G+F

RtREV+I+G+F

RtREV+I+G+F

GAGGAM

Dimmic et al. [19]

JTT

JTT+G+F

JTT+G+F

JTT+G+F

GAGHIV

Dimmic et al. [19]

JTT

JTT+G+F

JTT+G+F

JTT+G+F

GAMMA

Dimmic et al. [19]

RtREV

CPREV+G+F

RtREV+G

RtREV+G

LENTI

Dimmic et al. [19]

RtREV

RtREV+I+G+F

RtREV+I+G+F

RtREV+I+G+F

SPUMA

Dimmic et al. [19]

RtREV

RtREV+G

RtREV+G

RtREV+G

NONLTR

Dimmic et al. [19]

RtREV

RtREV+I+G+F

RtREV+I+G+F

RtREV+I+G+F

SIVPOLPRO

LANL

RtREV

RtREV+G+F

RtREV+G+F

RtREV+G


Keane et al. BMC Evolutionary Biology 2006 6:29   doi:10.1186/1471-2148-6-29

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