Table 3

Alignment Length Simulations. Results of the simulated datasets for alignments of 100, 500, and 1000 characters in length. Each entry is the number of times out of 100 replicates the correct model was selected by each measure (using the default NJ-JTT base tree).

100

500

1000


Model

AIC1

AIC2

BIC

AIC1

AIC2

BIC

AIC1

AIC2

BIC


Blosum

86

96

95

91

98

99

94

99

100

Blosum+I

95

100

95

94

99

100

98

100

100

Blosum+G

89

95

95

75

83

87

79

85

88

Blosum+I+G

44

30

30

90

88

87

95

95

94

CPREV

92

99

99

92

99

100

95

100

100

CPREV+I

94

100

100

98

99

99

99

99

100

CPREV+G

87

99

98

89

89

90

91

96

97

CPREV+I+G

51

37

37

80

75

73

95

94

94

Dayhoff

92

99

99

95

100

100

93

99

100

Dayhoff+I

94

100

100

98

100

100

96

100

100

Dayhoff+G

83

93

93

77

86

90

94

94

95

Dayhoff+I+G

54

35

38

82

74

74

95

92

91

JTT

95

98

98

94

99

100

93

98

100

JTT+I

95

99

98

96

100

100

96

100

100

JTT+G

87

94

94

78

85

86

91

91

93

JTT+I+G

48

36

40

89

85

82

96

95

94

MtREV

95

98

98

85

96

97

91

97

97

MtREV+I

97

100

100

92

99

100

97

100

100

MtREV+G

86

97

97

92

94

95

92

95

96

MtREV+I+G

29

17

17

68

65

61

87

85

83

WAG

91

97

96

88

97

99

97

98

100

WAG+I

94

100

99

98

100

100

97

99

100

WAG+G

85

95

93

83

89

89

86

95

95

WAG+I+G

50

34

36

79

73

69

97

96

94


Keane et al. BMC Evolutionary Biology 2006 6:29   doi:10.1186/1471-2148-6-29

Open Data