Table 2 |
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|
Overview of the datasets used in phylogenetic reconstructions |
||||
|
dataset |
number of sequences |
number of aa |
alpha1 |
sequences with divergent aa composition2 |
|
|
||||
|
hexokinase |
28 |
263 |
0.98 |
Treponema denticola |
|
glucose phosphate isomerase |
40 |
431 |
0.78 |
Plasmodium falciparum Dictyostelium discoideum Aquifex aeolicus |
|
fructose bisphosphate aldolase |
25 |
268 |
0.67 |
Aquifex aeolicus |
|
triose phosphate isomerase |
31 |
211 |
0.62 |
Aquifex aeolicus Dictyostelium discoideum |
|
glyceraldehyde phosphate dehydrogenase |
40 |
271 |
0.64 |
|
|
phosphoglycerate kinase |
34 |
277 |
0.67 |
|
|
phosphoglycerate mutase |
37 |
394 |
0.86 |
Desulfovibrio vulgaris Gracilaria tenuistipitata Porphyra purpurea Encephalitozoon cuniculi Halobacterium sp. |
|
enolase |
33 |
336 |
0.70 |
|
|
pyruvate kinase |
31 |
297 |
0.64 |
Giardia lamblia |
|
pyruvate phosphate dikinase |
29 |
682 |
0.51 |
Rickettsia prowazekii Thermobifida fusca |
|
|
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|
1 the gamma shape parameter of the gamma distribution estimated using TREE-PUZZLE 2 based on the chi square tests for deviation of amino acid frequencies implemented in TREE-PUZZLE |
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|
Stechmann et al. BMC Evolutionary Biology 2006 6:101 doi:10.1186/1471-2148-6-101 |
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