Figure 5.

Neighbor-joining phylogenetic tree using p-distances based on conserved RT domains 2 through 7 [29] of gypsy-like LTR retroelements from higher plants. The tree is rooted to gypsy. Bootstrap values from 1000 pseudo-replicates shown as percentages only at nodes with > 50% support. Vertical line indicates genus; key below. Named elements followed by Genbank Accession numbers; unnamed elements designated by Accession Number and, for translated nucleotide sequences, first nucleotide position. Wilma 634M12: AY494981 [51]; Wilma 426K20: AY146588 [51]; Wilma 107M9: AY368673 [51]; BAGY-2: AJ279072 [13]; Tmt1-1: AC146683 (115510-125622); Athila4-1: AC007209 [10]; Athila6-1: AF104920 [10]; Athila1-1: AB005248 [52]; Athila5-1: AF147260 [10]; AP005726: 133249; AC136972: 155124; Calypso2-1: AF186183 [10]; Calypso3-1: AF186185 [10]; Calypso5-1: AF186186 [10]; Calypso4-1: AF186185 [10]; Cyclops-1: AJ000639 [8]; AP004896: 78828; Tlc1-1: AP006432 (23839-35862); Tlc1-2: AP006350 (29612-19200); BBRE1: T12085; TfcII sr1: AF219199; TfcII sr25: AF219208; TfcII sr18: AF219207; cot8-6: AF378037 [10]; cot5-3: AF378037 [10]; cot8-7: AAL06412 [10]; Tpb1-1: AC149297 (90224-102138); syc2-3: AF378052 [10]; syc4-2: AF378053 [10]; DiasporaLc: AP007806: 43868; Tat4-1: AB005247 [44]; Cinful-1: AF049110 [45]; Grande1-4: X97604 [46]; RIRE2: AB030283 [47]; Reina: U69258 [48]; Cereba: AY040832 [49]; RIRE7: BAA89466 [50]; RIRE7-2: AL731604 (96205-102279); Dea1: T07863 [51]; del1-46: X13886 [52]; BAGY-1: Y14573 [27]; Tekay: AAL59229 [53]; RIRE3-2: AC123974 (48149-59938); RIRE3: AB014738 [50]; Retrosat2: AAM74400; Retrosat2-2: AL662955 (58578-70224); Gypsy: P10401 [54]. aTriticum; bHordeum; cMedicago; dArabidopsis; eOryza; fGlycine; gPisum; hLotus; iVicia; jFritillaria; kGossypium; lPopulus; mPlatanus; nZea; oAnanas; pLilium; qSorghum; rDrosophila

Yano et al. BMC Evolutionary Biology 2005 5:30   doi:10.1186/1471-2148-5-30
Download authors' original image