Table 1 |
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|
Variants of the conserved WRKYGQK peptide and zinc-finger motifs in rice WRKY domains |
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|
Pattern |
Domain |
Group |
Available ESTs |
|
|
|
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|
IDa |
Encoding the domain |
|||
|
|
||||
|
Variants of WRKYGQK |
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|
WRKYGEK |
OsWRKY7 |
3 |
||
|
OsWRKY8 |
3 |
CA755335 |
Yes |
|
|
OsWRKY65 |
3 |
|||
|
OsWRKY72 |
3 |
CF282152, CF330819, CF303772, CF282153, CF330818, CF305084, CF328161 |
Yes |
|
|
OsWRKY76 |
3 |
CA755335 |
||
|
OsWRKY77 |
3 |
Yes |
||
|
OsWRKY94 |
3 |
|||
|
WRKYGKK |
OsWRKY20 |
2_c |
||
|
OsWRKY27 |
2_c |
|||
|
OsWRKY36 |
2_c |
D43156 |
No |
|
|
OsWRKY46 |
2_c |
TC154521, AU093050 |
No |
|
|
OsWRKY63 |
2_c |
TC143003, BE230596, BM419201 |
Yes |
|
|
WRICGQK |
OsWRKY15 |
1N |
||
|
WRMCGQK |
OsWRKY16 |
1N |
||
|
WKKYGQK |
OsWRKY25 |
unassigned |
AU162739 |
Yes |
|
WIKYGQK |
OsWRKY55 |
3 |
||
|
WKRYGQK |
OsWRKY66C |
3 |
AW155482 |
No |
|
WSKYEQK |
OsWRKY67N |
3 |
CA760141 |
No |
|
WRKYSEK |
OsWRKY92 |
3 |
||
|
Variants of zinc-finger motifs |
||||
|
C_X5_C_X25_H_X2_C |
OsWRKY6 |
2_d + 2_e |
||
|
C_X8_C_X25_H_X1_C |
OsWRKY67N |
3 |
CA760141 |
No |
|
C_X6_C_X28_H_X1_C |
OsWRKY68 |
3 |
TC103502 |
Yes |
|
|
||||
|
aTIGR's TCs or GenBank's accessions. |
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|
Zhang and Wang BMC Evolutionary Biology 2005 5:1 doi:10.1186/1471-2148-5-1 |
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