Table 1 |
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|
Species, accession numbers (UniProt, EMBL, NCBI or TIGR Gene Index) and common names (where available) of PPP phosphatase sequences shown in Figure 4. For A. thaliana sequences, gene numbers are also indicated. Sequence No. 67 is available from Chlamydomonas reinhardtii draft genome [65]. |
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|
No. |
Accession |
Species name |
|
|
||
|
Rhilphs |
||
|
1 |
Q9SR61; At3g09960 |
Arabidopsis thaliana |
|
2 |
Q9SR62; At3g09970 |
Arabidopsis thaliana |
|
3 |
BE034080 |
Mesembryanthemum crystallinum |
|
4 |
BQ995369 |
Lactuca sativa |
|
5 |
AW034786 |
Lycopersicon esculentum |
|
6 |
BU875146 |
Populus balsamifera |
|
7 |
BG457803 |
Medicago truncatula |
|
8 |
AV425727 |
Lotus japonicus |
|
9 |
BM731295 |
Glycine max |
|
10 |
BF261816 |
Hordeum vulgare |
|
11 |
BQ788728 |
Triticum aestivum |
|
12 |
AL731641 |
Oryza sativa |
|
13 |
CF670562 |
Pinus taeda |
|
14 |
BQ039171 |
Physcomitrella patens |
|
Group I (α-Proteobacteria) |
||
|
15 |
Q987U4 |
Mesorhizobium loti |
|
16 |
Q8UA33 |
Agrobacterium tumefaciens |
|
17 |
ZP_00054691 |
Magnetospirillum magnetotacticum |
|
18 |
ZP_00015226 |
Rhodospirillum rubrum |
|
19 |
ZP_00014771 |
Rhodospirillum rubrum |
|
20 |
CAE28794 |
Rhodopseudomonas palustris |
|
21 |
Q9ABQ8 |
Caulobacter crescentus |
|
22 |
ZP_00051041 |
Magnetospirillum magnetotacticum |
|
23 |
ZP_00093979 |
Novosphingobium aromaticivorans |
|
24 |
Q92V37 |
Sinorhizobium meliloti |
|
Group VII (heterogeneous) |
||
|
25 |
Q8YZT4 |
Anabaena sp. |
|
26 |
Q9WZK1 |
Thermotoga maritima |
|
27 |
O34205 |
Fervidobacterium islandicum |
|
28 |
NZ_AABE01000101 |
Cytophaga hutchinsonii |
|
Group III (γ-Proteobacteria and bacteriophage λ) |
||
|
29 |
P03772 |
Bacteriophage λ |
|
30 |
P55798 |
E. coli PrpA |
|
31 |
Q8VPE2 |
Salmonella typhimurium PrpA |
|
32 |
Q8Z487 |
Salmonella enterica |
|
33 |
P55799 |
E. coli PrpB |
|
Group IV (Firmicutes) |
||
|
34 |
Q81YR3 |
Bacillus anthracis |
|
35 |
Q9FB69 |
Lactococcus lactis |
|
36 |
Q97FF3 |
Clostridium acetobutylicum |
|
Alphs |
||
|
37 |
BM291808 |
Amblyomma variegatum |
|
38 |
TC9835 |
Ciona intestinalis |
|
39 |
BU652795 |
Chlamydomonas reinhardtii |
|
40 |
AC091781 |
Trypanosoma brucei |
|
41 |
AC084046 |
Trypanosoma brucei |
|
42 |
AL499620 |
Leishmania major |
|
43 |
BQ143558 |
Metarhizium anisopliae |
|
44 |
AC127427 |
Magnaporthe grisea |
|
45 |
AA966318 |
Aspergillus nidulans |
|
46 |
P40152 |
Saccharomyces cerevisiae |
|
ApaH |
||
|
47 |
Q8Y1K9 |
Ralstonia solanacearum ApaH |
|
48 |
Q9JVF4 |
Neisseria meningitidis ApaH |
|
49 |
P05637 |
Escherichia coli ApaH |
|
Group VI (heterogeneous) |
||
|
50 |
O31614 |
Bacillus subtilis |
|
51 |
O69213 |
Anabaena sp. PrpA |
|
52 |
Q93JF4 |
Streptomyces coelicolor |
|
53 |
Q9RS78 |
Deinococcus radiodurans |
|
Group II (Cyanobacteria) |
||
|
54 |
O54390 |
Microcystis aeruginosa PP1-Cyano 1 |
|
55 |
P74150 |
Synechocystis sp. |
|
56 |
Q8YP31 |
Anabaena sp. |
|
57 |
ZP_00072257 |
Trichodesmium erythraeum |
|
58 |
Q8DGA2 |
Thermosynechococcus elongatus |
|
Shelphs |
||
|
59 |
AC119500* |
Leishmania major |
|
60 |
Q8EBN0 |
Shewanella oneidensis |
|
61 |
Q9S427 |
Shewanella sp. |
|
62 |
TIGR_167879 Contig1731 |
Colwellia psychrerythraea |
|
63 |
CF394707 |
Pinus taeda |
|
64 |
TC31593 |
Solanum tuberosum |
|
65 |
Q944L7; At1g18480 |
Arabidopsis thaliana |
|
66 |
BF645180 |
Medicago truncatula |
|
67 |
Scaffold_45 |
Chlamydomonas reinhardtii |
|
68 |
Q9LMJ5; At1g07010 |
Arabidopsis thaliana |
|
69 |
AW266595 |
Mesembryanthemum crystallinum |
|
70 |
BG644111 |
Lycopersicon esculentum |
|
71 |
BG450922 |
Medicago truncatula |
|
72 |
BI787505 |
Glycine max |
|
73 |
Q8L676 |
Oryza sativa |
|
74 |
TC21958 |
Hordeum vulgare |
|
75 |
AC007863 |
Trypanosoma brucei |
|
76 |
AL499621 |
Leishmania major |
|
77 |
TIGR_246197 Contig433 |
Myxococcus xanthus |
|
78 |
EAK84303 |
Ustilago maydis |
|
79 |
O74480 |
Schizosaccharomyces pombe |
|
80 |
EAK87480 |
Cryptosporidium parvum |
|
81 |
Q7RIH8 |
Plasmodium yoelii |
|
82 |
Q8IKE5 |
Plasmodium falciparum |
|
83 |
Q8I5Y5 |
Plasmodium falciparum |
|
84 |
Q7RR22 |
Plasmodium yoelii |
|
Group V (heterogeneous) |
||
|
85 |
O87639 |
Streptomyces coelicolor |
|
86 |
Q9RVT7 |
Deinococcus radiodurans |
|
Archaea |
||
|
87 |
O28453 |
Archaeoglobus fulgidus PPA |
|
88 |
Q8ZW26 |
Pyrobaculum aerophilum |
|
89 |
O34200 |
Methanosarcina thermophila PP1-arch2 |
|
90 |
Y12396 |
Pyrodictium abyssi |
|
"Conventional" eukaryotic PPP |
||
|
91 |
Q9U493 |
Plasmodium falciparum PPJ |
|
92 |
Q8I728 |
Trypanosoma cruzi PPEF |
|
93 |
BH900132 |
Ostreococcus tauri |
|
94 |
O14829 |
Homo sapiens PPEF1 (PP7) |
|
95 |
Q8IDE7 |
Plasmodium falciparum PP5 |
|
96 |
P53041 |
Homo sapiens PP5 |
|
97 |
P53043 |
Saccharomyces cerevisiae PPT |
|
98 |
P32838 |
Saccharomyces cerevisiae PPG |
|
99 |
P05323 |
Homo sapiens PP2A |
|
100 |
O00743 |
Homo sapiens PP6 |
|
101 |
Q08209 |
Homo sapiens Calcineurin (PP2B) |
|
102 |
P08129 |
Homo sapiens PP1 |
|
103 |
P32945 |
Saccharomyces cerevisiae PPQ |
|
104 |
O49346 |
Arabidopsis thaliana PP7 |
|
|
||
|
* This phosphatase is unlikely to be catalytically active due to replacements of essential residues in the active centre. |
||
|
Andreeva and Kutuzov BMC Evolutionary Biology 2004 4:47 doi:10.1186/1471-2148-4-47 |
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