Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer
- Equal contributors
1 Department of Plant Biology, Southern Illinois University, Carbondale, IL 62901-6509, USA
2 Institute of Systematic Botany, University of Zurich, 8008 Zurich, Switzerland
3 Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109-1048, USA
4 Department of Zoology, Southern Illinois University, Carbondale IL, 62901-6501, USA
BMC Evolutionary Biology 2004, 4:40 doi:10.1186/1471-2148-4-40Published: 20 October 2004
Additional File 1:
MP strict consensus tree from mitochondrial matR Strict consensus of 200,000+ trees obtained from maximum parsimony (unconstrained MP) analysis of the 77-taxon mitochondrial matR matrix. Bootstrap percentages are shown above the lines. Rafflesiales taxa are shown in bold italics.
Format: EPS Size: 8.2MB Download file
Additional File 2:
Strict consensus MP tree from mitochondrial atp1 Strict consensus of 328 trees resulting from a MP analysis of the 71-taxon mitochondrial atp1 matrix. Rafflesiales taxa are shown in bold italics. Bootstrap percentages are given above the branches.
Format: EPS Size: 8.3MB Download file
Additional File 3:
Majority rule consensus BI tree from 3-gene data set Majority rule consensus of 20,000 trees (10 million generations, 5 million burn-in) resulting from Bayesian analysis of the 77-taxon nuclear 3-gene matrix. Clades with Bayesian posterior probabilities are indicated above the clades. Rafflesiales taxa are shown in bold italics.
Format: EPS Size: 8.9MB Download file
Additional File 4:
Strict consensus constrained MP tree from nuclear SSU rDNA Strict consensus of 6 trees resulting from the constrained MP analysis of the 77-taxon nuclear SSU rDNA matrix. Rafflesiales taxa are shown in bold italics. Bootstrap percentages are given above selected nodes (Rafflesiales).
Format: EPS Size: 7.5MB Download file