Table 6

Web sources for the protein sequences used in this study

Organism

Source

URL


H. sapiens

NCBI

ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/protein/ webcite

M. musculus

NCBI

ftp://ftp.ncbi.nlm.nih.gov/genomes/M_musculus/protein/ webcite

D. melanogaster

Ensembl

ftp://ftp.ensembl.org/pub/current_fly/data/fasta/pep/ webcite

A. gambiae

Ensembl

ftp://ftp.ensembl.org/pub/current_mosquito/data/fasta/pep/ webcite

S. cerevisiae

Saccharomyces Genome Database

ftp://genome-ftp.stanford.edu/pub/yeast/data_download/sequence/genomic_sequence/orf_protein/ webcite

C. albicans

Standford Genome Technology Center

ftp://cycle.stanford.edu/pub/projects/candida/ webcite

E. coli

NCBI

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K12/ webcite

Y. pestis

NCBI

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Yersinia_pestis_KIM/ webcite

B. subtilis

NCBI

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Bacillus_subtilis/ webcite

B. halodurans

NCBI

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Bacillus_halodurans/ webcite

P. horikoshii

NCBI

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pyrococcus_horikoshii/ webcite

P. furiosus

NCBI

ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Pyrococcus_furiosus/ webcite


Jordan et al. BMC Evolutionary Biology 2004 4:22   doi:10.1186/1471-2148-4-22

Open Data