Table 1

Rice Dof transcription factors

Sequence Namea

Japonica BAC/PAC Nameb

Indica Contig Namec

Predicted Gene structured

Chomosomee

Groupf


OsDof-1

P0505D12

AAAA01001390.1

___Dof___

(T)

1

c1

OsDof-2

P0453A06

AAAA01021216.1

_▼_Dof___

(T)

1

d1

OsDof-3

P0001B06

AAAA01003833.1

___Dof___

(T)

1

d2

OsDof-4

P0038F12

AAAA01000894.1

_▼2_Dof___

(T)

1

d1

OsDof-5

P0007F06

AAAA01006178.1i

___Dof___

(T)

1

d1

OsDof-6

B1131G08

AAAA01001653.1

___Dof___

(R)

1

d1

OsDof-7

49D11

AAAA01000209.1

_▼_Dof___

(T)

2

c1

OsDof-8

B1121A12

AAAA01004110.1

_▼2_Dof_▼_

(T)

2

a

OsDof-9

P0657H12

AAAA01000342.1

___Dof___

(T)

2

c2

OsDof-10

OSJNBa0009N02

AAAA01004826.1

___Dof_▼2_

(T)

2

c2

OsDof-11

OSJNBa0010D22

AAAA01014987.1

___Dof___

(T)

3

a

OsDof-12

OSJNBa0091P11

AAAA01007635.1

_▼_Dof___

(T)

3

d1

OsDof-13

OSJNBa0063J18

AAAA01000005.1

___Dof_▼_

(T)

3

d3

OsDof-14

OSJNBa0002D01

AAAA01000212.1

_▼_Dof___

(T)

3

b

OsDof-15

OSJNBa0079B15

AAAA01003692.1

___Dof___

(T)

3

a

OsDof-16

OJ1754_E06

AAAA01000954.1

___Dof___

(R)

3

b

OsDof-17

OSJNBa0064G10

AAAA01000011.1

_▼_Dof___

(T)

4

d2

OsDof-18

OSJNB0005N02

AAAA01002346.1

___Dof_▼2_

(T)

4

c2

OsDof-19

P0016H04

AAAA01007236.1

_▼_Dof___

(T)

5

b

OsDof-20

P0491D10

AAAA01062012.1j

___Dof_▼_

(T)

6

a

OsDof-21

P0407H12

AAAA01008294.1

___Dof___

(T)

7

b

OsDof-22

P0483G08

AAAA01004849.1

___Dof___

(T)

7

b

OsDof-23

OSJNBa0060O17

AAAA01004298.1

___Dof___

(R)

7

d1

OsDof-24

P0605H02

AAAA01033718.1

___Dof___

(R)

8

d3

OsDof-25

P0556A05

AAAA01001409.1

_▼2_Dof___

(R)

9

d3

OsDof-26

OSJNBa0060A14

AAAA01002383.1

_▼3_Dof___

(R)

10

d1

OsDof-27

OSJNBa0066I08

AAAA01003749.1

_▼2_Dof_▼2_

(T)

10

d2

OsDof-28

OSJNBa0016C14

AAAA01003609.1

_▼_Dof___

(T)

12

b

OsDof-29

CL012178.39g

AAAA01002638.1

___Dof___

(R)

c1

OsDof-30

CL037947.70h

AAAA01068763.1

___Dof___

(R)

d3


a Sequence name designation is arbitrary. b O. sativa ssp. japonica BAC/PAC clone name at the rice TIGR db. c O. sativa ssp. indica contig name at the NCBI O. sativa BLAST page. d Gene structure prediction according to the rice TIGR db (T) or to the RiceGAAS system (R). Intron (▼) relative position respect to the Dof domain. Sub-index indicates number of introns. e Chromosome assignment according to O. sativa ssp. japonica at the rice TIGR db. f Group designation after the phylogenetic analysis displayed in Figure 2B. g O. sativa ssp. japonica contig name at the rice TMRI db. h O. sativa ssp. japonica contig (at TMRI) containing incomplete gene (lacking the Dof domain) i O. sativa ssp. indica contig containing incomplete gene (lacking the Dof domain) j O. sativa ssp. indica contig containing a misassembled gene.

Lijavetzky et al. BMC Evolutionary Biology 2003 3:17   doi:10.1186/1471-2148-3-17

Open Data