Evolutionary classification of ammonium, nitrate, and peptide transporters in land plants
1 Centre for Forest Biology & Department of Biology, University of Victoria, PO Box 1700 STN CSC, Victoria, BC V8W 2Y2, Canada
2 Centre for Forest Biology & Department of Biochemistry and Microbiology, University of Victoria, PO Box 1700 STN CSC, Victoria, BC V8W 2Y2, Canada
BMC Evolutionary Biology 2014, 14:11 doi:10.1186/1471-2148-14-11Published: 20 January 2014
Additional file 1:
Protein sequences included in phylogenetic analyses including name used, categorization applied, species of origin, database accessions (GenBank for non-plant sequences, Phytozome v6.0 for plant sequences), and protein sequence.
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Additional file 2:
Maximum Likelihood phylogenetic reconstructions of the NRT1 family by supergroup. For each tree, sequences were realigned and trimmed separately prior to phylogenetic reconstruction. Groups are defined and colored as in Figure 1. Bootstrap values from 1,000 replicates are given for branches up to those defining groups only. Supergroups C and D, supergroups F and G, and supergroups H and I were analyzed together, because they each form monophyletic clans with high bootstrap support (see Figure 1) but have bryophyte and lycophyte proteins with ambiguous relation to the two supergroups included.
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