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Open Access Highly Accessed Research article

Phylogenomics of strongylocentrotid sea urchins

Kord M Kober12* and Giacomo Bernardi1

Author Affiliations

1 Department of Ecology & Evolutionary Biology, University Of California Santa Cruz, Santa Cruz, CA, USA

2 Department of Physiological Nursing, University Of California San Francisco, San Francisco, CA, USA

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BMC Evolutionary Biology 2013, 13:88  doi:10.1186/1471-2148-13-88

Published: 23 April 2013

Additional files

Additional file 1: Figure S1:

The density tree of the most likely trees obtained from the Maximum Likelihood analysis of putatively neutral nuclear genes (See text for details).

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Additional file 2: Figure S2:

Most likely ML tree for NADH dehydrogenase subunit mitochondrial genes. Node support from 10 bootstrap replicates.

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Additional file 3: Figure S3:

Most likely ML tree for protein coding mitochondrial genes. Node support from 10 bootstrap replicates.

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Additional file 4: Figure S4:

Most likely ML tree for ribosomal RNA mitochondrial genes. Node support from 10 bootstrap replicates.

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Additional file 5: Figure S5:

Cladograms produced from 12S sequences. Sequences (A) as presented in Fig. 2 of Lee (2003) and (B) ML methods with sequences of Lee (2003) and additional sequences used in this study. Branches are labeled with ML bootstrap values.

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