Table 5

Genic diversity in eastern Pacific Bathymodiolus mussels
Parameter1 N13 N11 N9 GAR S7 S11 S142 S17 S182 S212 S23 S31 S38 Total
COI (N) 22 21 62 48 45 21 14 135 47 34 21 41 27 538
k 10 12 20 21 16 8 6 37 14 20 11 17 8 121
H 13 17 23 28 19 11 6 34 15 20 11 23 14 96
h 0.810 0.871 0.753 0.856 0.839 0.776 0.769 0.841 0.710 0.934 0.819 0.870 0.658 0.890
SD 0.062 0.060 0.052 0.044 0.033 0.075 0.090 0.024 0.064 0.026 0.082 0.039 0.087 0.008
π x100 0.674 0.710 0.741 0.761 0.597 0.618 0.247 0.485 0.242 0.600 1.394 0.673 0.523 1.637
SD x100 0.393 0.412 0.420 0.425 0.353 0.366 0.186 0.292 0.174 0.357 0.754 0.383 0.314 0.094
Fu’s Fs −0.625 −3.360 −6.277 −7.654 −5.578 −0.221 −2.300 −26.905 −10.272 −13.659 0.109 −5.300 −0.176
Prob 0.369 0.044 0.023 0.003 0.012 0.500 0.021 0.000 0.000 0.000 0.554 0.031 0.508
SAHH (N) 32 30 26 28 22 20 n.d. 38 n.d. n.d. 42 46 58 232
k 2 6 1 3 1 6 7 3 3 3 9
H 3 4 2 4 2 4 6 6 5 5 14
h 0.123 0.402 0.271 0.206 0.485 0.553 0.617 0.623 0.707 0.525 0.806
SD 0.078 0.104 0.099 0.101 0.064 0.111 0.056 0.044 0.036 0.071 0.013
π x100 0.079 0.516 0.170 0.176 0.305 0.649 0.568 0.784 0.676 0.436 1.476
SD x100 0.138 0.423 0.213 0.217 0.305 0.504 0.449 0.493 0.504 0.372 0.894
Fu’s Fs −2.437 −0.073 0.511 −2.610 1.139 0.063 −1.656 −1.977 0.004 −0.776
Prob 0.003 0.464 0.379 0.007 0.686 0.492 0.127 0.103 0.528 0.278
ANT (N) 26 28 34 52 24 22 n.d. 38 n.d. n.d 40 54 52 370
k 2 1 1 2 1 1 3 2 2 1 3
H 1 0 0 1 0 0 1 1 1 0 1
h 0.148 0 0 0.039 0 0 0.240 0.296 0.073 0 0.449
SD 0.088 0 0 0.036 0 0 0.086 −0.079 0.048 0 0.020
π x100 0.029 0 0 0.008 0 0 0.048 0.060 0.015 0 0.091
SD x100 0.049 0 0 0.002 0 0 0.063 0.071 0.033 0 0.004
Fu’s Fs −0.317 0 0 −1.669 0 0 −1.172 0.838 −0.949 0
Prob 0.182 NA NA 0.029 NA NA 0.131 0.513 0.089 NA
Cat (N) 36 26 22 50 22 20 n.d. 42 n.d. n.d 40 56 66 380
k 0 0 0 1 0 0 2 2 2 0 2
H 1 1 1 2 1 1 3 4 3 1 4
h 0 0 0 0.040 0 0 0.094 0.480 0.198 0 0.465
SD 0 0 0 0.380 0 0 0.061 0.069 0.068 0 0.017
π x100 0 0 0 0.105 0 0 0.370 2.267 0.948 0 2.380
SD x100 0 0 0 0.314 0 0 0.610 1.814 1.034 0 1.834
Fu’s Fs 0 0 0 −1.636 0 0 −2.089 0.294 −0.222 0
Prob NA NA NA 0.040 NA NA 0.016 0.555 0.338 NA
Col-1 (N) 32 28 24 24 20 22 n.d. 40 n.d. n.d. 42 46 54 332
k 0 0 0 0 0 0 2 2 2 2 3
H 1 1 1 1 1 1 2 2 4 4 4
h 0 0 0 0 0 0 0.142 0.177 0.467 0.526 0.370
SD 0 0 0 0 0 0 0.071 0.074 0.070 0.071 0.034
π x100 0 0 0 0 0 0 0.274 0.340 0.777 0.715 0.652
SD x100 0 0 0 0 0 0 0.331 0.380 0.633 0.597 0.553
Fu’s Fs 0 0 0 0 0 0 0.773 1.159 0.252 0.167
Prob NA NA NA NA NA NA 0.495 0.590 0.537 0.526
EF1α (N) 32 28 22 22 18 22 n.d. 18 n.d. n.d. 42 50 60 314
k 0 0 0 0 0 1 0 1 0 0 1
H 1 1 1 1 1 2 1 2 1 1 2
h 0 0 0 0 0 0.091 0 0.345 0 0 0.474
SD 0 0 0 0 0 0.081 0 0.073 0 0 0.013
π x100 0 0 0 0 0 0.505 0 1.916 0 0 2.632
SD x100 0 0 0 0 0 1.043 0 2.14 0 0 2.541
Fu’s Fs 0 0 0 0 0 −0.957 0 1.119 0 0
Prob NA NA NA NA NA 0.07 NA 0.576 NA NA

1 Abbreviations: N = sample size per locus; H = number of haplotypes; k = number of polymorphic sites; h = haplotype diversity; π = nucleotide diversity; SD = one standard deviation. NA = no data. Bold values indicate significance.

2 Data from Plouviez et al. 2010; n.d. indicates no data.

Johnson et al.

Johnson et al. BMC Evolutionary Biology 2013 13:21   doi:10.1186/1471-2148-13-21

Open Data