Additional file 3.
Phylogenetic trees of the plant myosins based on the motor domain and full-length sequences. The grouping of plant myosin sequences into different subtypes is based on the phylogenetic trees calculated with RAxML (bootstrap values in percentages), MrBayes (posterior probabilities) and ClustalW (bootstrap values as absolute occurrences of branchings in 1,000 trees). Different subsets of the myosin sequences (the alignment is available in Additional file 8) were used to calculated the trees: the myosin head domains of representative sequences with less than 90% sequence identity (as obtained by CD-Hit), the myosin head domains of all complete myosin sequences included in this analysis, and the full-length sequences of representative sequences below an 90% identity threshold (CD-Hit). All resulting trees are included in this file. The protein abbreviation “Myo” was omitted in phylogenetic trees due to length limitations of sequence names in tree reconstruction software.
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Mühlhausen and Kollmar BMC Evolutionary Biology 2013 13:202 doi:10.1186/1471-2148-13-202