Table 1

List of plant species and PDCD4 sequences used with the number of MA3 domains present in each protein
Organism Protein accession Nucleotide accession Number of MA3 domains
Arabidopsis thaliana NP_567708 At4g24800 (MAT5) 4
NP_568968 At5g63190 (MAT6) 4
NP_190411 At3g48390 (MAT7) 4
NP_173687 At1g22730 (MAT8) 4
Capsella rubella EOA15859 4
EOA14564 4
EOA23591 4
EOA39121 4
Thellungiella halophila Thhalv10024556ma 4
Thhalv10003735ma 4
Thhalv10006903ma 4
Brassica rapa Bra013836a 4
Bra038615a 4
Bra024534a 4
Gossypium raimondii Gorai.001G062000.1a 4
Gorai.003G108800.1a 4
Gorai.005G076400.1a 4
Theobroma cacao Thecc1EG014544t1a 4
Thecc1EG039086t1a 4
Populus trichocarpa XP_002318100 XM_002318064 4
XP_002307530 XM_002307494 4
Ricinus communis XP_002511272 XM_002511226 4
XP_002527108 XM_002527062 4
Medicago truncatula XP_003608913 XM_003608865 4
XP_003619027 XM_003618979 4
Glycine max XP_003525619 XM_003525571 4
XP_003548962 XM_003548914 4
Vitis vinifera XP_002277813 XM_002277777 4
XP_002264439 XM_002264403 4
Solanum lycopersicum XP_004237843 LOC101258853 4
XP_004236308 LOC101255979 4
XP_004236309 LOC101256273 4
Eschscholzia californica TUHA-2426b 4
EVOD-8494b 4
Aristolochia elegans PAWA5255b 4
PAWA2930b 4
Hordeum vulgare BAJ94459 AK363255 4
BAK08048 AK376854 4
Sorghum bicolor XP_002444968 Sb07g002090 4
XP_002448072 Sb06g020520 4
XP_002465627 Sb01g042530 4
Brachypodium distachyon XP_003573315 XM_003573267 4
XP_003579994 XM_003579946 4
XP_003561877 XM_003561829 4
Zea mays NP_001147914 NM_001154442 4
NP_001159302 NM_001165830 4
Oryza sativa NP_001060879 Os08g0120500 4
NP_001053119 Os04g0482800 4
AAN05329 Os03g0222100 4
Illicium floridanum VZCI-11530b 4
Amborella trichopoda URDJ-37850b 4
Austrobaileya scandens FZJL-1758b 4
FZJL-1759b 4
Picea abies MA_2314g0010c 4
MA_10693g0010c 4
Cycas micholitz XZUY-1711b 4
Sundacarpus amarus KLGF-13902b 4
Selaginella moellendorffii XP_002967718 XM_002964270 4
XP_002979104 XM_002979058 4
Physcomitrella patens XP_001777050 XM_001776998 4
XP_001754785 XM_001754733 4
Chaetosphaeridium globosum HO379087 4d
Volvox carteri XP_002956063 XM_002956017 4
Chlamydomonas reinhardtii XP_001696827 XM_001696775 4
Chlorella variabilis EFN55681 GL433844 4a
Ostreococcus tauri XP_003079341 XM_003079293 2
Ostreococcus lucimarimus XP_001417999 XM_001417962 2
Micromonas pusilla XP_003056900 XM_003056854 2
Micromonas sp. RCC299 XP_002502542 XM_002502496 2
Phaeodactylum tricornutum XP_002184928 XM_002184892 2
Ectocarpus siliculosus CBJ33138 FN648632 2
Thalassiosira pseudonan XP_002295291 XM_002295255 2
Aureococcus anophagefferens EGB07675 GL833130 2
Phytophthora sojae EGZ06926 JH159163 2
Phytophthora infestans XP_002899252 XM_002899206 2
Albugo laibachii CCA24083 FR824266 2

aObtained from Phytozome v9.1 [38].

bObtained from http://www.onekp.com webcite.

cObtained from the Spruce Genome Project [39].

dPartial sequence available suggests the likely presence of four MA3 domains.

Cheng et al.

Cheng et al. BMC Evolutionary Biology 2013 13:199   doi:10.1186/1471-2148-13-199

Open Data