Table 4 |
||||||||||||||||||
| Seventeen haplotypes of C. taliensis identified in nrDNA PAL sequences | ||||||||||||||||||
| Sequence positions | ||||||||||||||||||
| Haplotypes | 3 | 5 | 7 | 9 | 1 | 1 | 1 | 2 | 2 | 3 | 3 | 3 | 3 | 4 | 4 | 5 | 5 | 6 |
| 0 | 8 | 9 | 7 | 6 | 6 | 7 | 0 | 0 | 2 | 3 | 5 | 9 | 3 | 8 | 2 | 8 | 1 | |
| 3 | 4 | 2 | 4 | 8 | 6 | 7 | 8 | 1 | 6 | 1 | 0 | 6 | 9 | |||||
| H1 | C | C | C | C | T | G | T | G | A | G | A | C | C | A | C | A | C | G |
| H2 | • | T | • | • | C | • | • | • | G | • | • | • | G | • | • | T | • | |
| H3 | • | • | • | • | C | • | • | • | • | • | • | • | • | • | • | • | • | • |
| H4 | • | T | • | • | C | • | • | • | • | • | • | • | • | G | • | • | T | • |
| H5 | • | T | • | • | C | • | • | • | • | • | • | • | • | G | • | • | T | A |
| H6 | • | • | • | • | C | • | • | • | • | • | • | T | • | • | • | • | • | • |
| H7 | • | T | • | • | C | A | • | • | • | • | • | • | • | G | • | • | T | • |
| H8 | • | T | • | • | C | • | • | T | • | • | • | • | • | G | • | • | T | • |
| H9 | • | • | • | • | C | • | C | • | • | • | G | • | • | G | • | • | T | • |
| H10 | • | T | • | • | C | • | • | • | • | • | • | • | G | T | • | T | • | |
| H11 | T | • | • | • | C | • | • | • | • | • | • | • | T | • | • | • | • | • |
| H12 | • | T | • | • | C | • | • | • | G | • | • | • | • | G | • | C | T | • |
| H13 | • | • | T | • | C | • | C | • | • | • | • | • | • | G | • | • | T | • |
| H14 | • | T | • | T | C | • | • | • | • | • | • | • | • | G | • | • | T | • |
| H15 | T | • | • | • | C | • | • | • | • | • | • | • | • | • | • | • | • | • |
| H16 | • | • | • | • | C | • | C | • | • | • | • | • | • | G | • | • | T | • |
| H17 | • | T | • | • | C | • | • | • | • | A | • | • | G | • | • | T | • | |
The number at the top indicates polymorphic sites, and dots represent nucleotide variants identical to the first sequence.
Liu et al. BMC Evolutionary Biology 2012 12:92 doi:10.1186/1471-2148-12-92
