Table 3

Structural predictions for Caenorhabditis LBDs by sequence threading
LBD Best structural match PDB ID P
CbNHR-67 H. sapiens NR2C2 TR4 LBD 3p0u 1 x 10-6
CeNHR-67 H. sapiens NR2C2 TR4 LBD 3p0u 9 x 10-7
CbFAX-1 H. sapiens NR2F2 COUP LBD 3cjw 0.024
CeFAX-1 H. sapiens NR2F2 COUP LBD 3cjw 0.003
CeNHR-111 H. sapiens NR2F2 COUP LBD 3cjw 1 x 10-5
CbNHR-239 No significant matches. - > 0.10
CeNHR-239 No significant matches. - > 0.05

Probability values (P) and top match for Caenorhabditis LBDs based on PsiPred and pGenThreader [52,53]. Additional significant matches to known NR LBD structures were obtained for each protein, however the significance of matches for both FAX-1 LBDs was low. Species abbreviations are given in Figure 1.

Weber et al.

Weber et al. BMC Evolutionary Biology 2012 12:81   doi:10.1186/1471-2148-12-81

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