Table 2

Annotation of NR2E orthologs by clade
Human C. elegans Drosophila Other species
Tlx nhr-67 tailless Nematostella NvR5 (2)
[NM 003269] [NM 069693] [NM 079857] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Apis AmTll (3)
Bombyx Tll (4)
Tribolium Tll (5)
Brugia BmNHR-15 (6)
Schmidtea Tlx (7)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Strongylocentrotus Tll (8)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Saccoglossus NP 001158362;Tll (9)
PNR fax-1 unfulfilled/ Nematostella NvR6-NvR9 (2)
[NM 016346] [NM 076146] Hr51 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
[NM 137188] Apis AmHr51 (3)
Bombyx BmHr51 (4)
Tribolium Hr51 (5)
Brugia BmNHR-16 (6)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Strongylocentrotus Pnr (8)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Saccoglossus NP 001158447; PNR (9)
No ortholog nhr-239 Hr83 (1) Nematostella NvR6-NvR9 (2)
[NM 065178] [NM 141390] --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Apis AmHr83 (3)
Bombyx ortholog not identified (4)
Tribolium Hr83 (5)
Brugia BmNHR-C* (6)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Strongylocentrotus “Fax1” (8)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Saccoglossus XM 002740611; “NR6A1-like” (9)

(1) Annotated as Drosophila “Fax-1” in [32].

(2) Nematostella vectensis, four NR2E orthologs not clearly resolved, [38], this work.

(3) Apis mellifera[39].

(4) Bombyx mori[40].

(5) Tribolium castaneum[18,41].

(6) Brugia malayi[15].

(7) Schmidtea mediterranea[42].

(8) Strongylocentrotus purpuratus[43].

(9) Saccoglossus kowalevskii[44,45], this work.

* Incomplete gene assembly, tentative gene designation. The “Other species” column is organized by taxonomic groups: cnidarian, ecdysozoa, echinoderm, and hemichordate.

Weber et al.

Weber et al. BMC Evolutionary Biology 2012 12:81   doi:10.1186/1471-2148-12-81

Open Data