Table 5

Phylogenetic information of the nuclear regions used in this study for the individual and combined datasets
DNA sequence region
ITS chs1 tub2 EF1αc Combinedd
isolatesa 73 73 73 69 69
haplotypes 2 2 8 17 29
sites 483 473 1425 1183 2608
constant characters 472 420 1329 980 2309
variable characters (uninformative) 11 53 92 166 258
parsimony informative characters 0 0 4 37 41
% informative characters 0 0 0.28 3.13 1.57
Model AICb K80 GTR GTR GTR + G GTR + G

aIsolates were collected from triticale (35), wheat (35) and rye (2). We also included an isolate from barley (B.g. f.sp. hordei) in our analysis for comparison. These sequences were retrieved from GenBank with accession numbers AJ313137, AB273568, AJ313149 and HM538424.1, respectively for each locus.

bModel of nucleotide substitution [49,50].

cWe were unable to obtain EF1α sequences for the isolates BgTR_A29, Bgta_B5, BgTR_B9 and Bgtd_D4.

dOnly the loci tub2 and EF1α were included in the combined dataset.

Troch et al.

Troch et al. BMC Evolutionary Biology 2012 12:76   doi:10.1186/1471-2148-12-76

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