Resolution:
## Figure 3.
Relative frequencies of synonymous substitutions (Ks) for orthologs in three B. henselae strains. Each dot represents a triplet of orthologs, as determined by best reciprocal BLAST
hits. The sum of the pair-wise Ks values for a triplet was normalized to one, and
the proportion represented by each pair-wise comparison is plotted on the triangle
plot, one for each axis. Tick marks indicate the direction of axis reading. Colors
are log-proportional to the highest Ks value of the triplet, with yellow representing
low Ks values and red high ones. The average of the dots is represented with a large
black dot, and the values of the average Ks proportions are reported on the axes with
black dots. Histograms showing the distribution of the Ks proportions are shown next
to each axe. X-axis of the two upper histograms has been reversed to match the direction
of the corresponding axes. See Additional file
7 for more details.
Guy |