Table 3

Percentage of branch length for five classes of ω ratio for the different genes
PTP genes % of clade branch length with :
ω<0.2 0.2<ω<0.5 0.5<ω<1 1<ω<2 ω>2
Ι 6.6% 34.4% 50.7% 3.3% 5.1%
Ζ 17.5% 1.7% 45.6% 10.3% 24.9%
3.0% 26.3% 42.5% 21.5% 6.8%
70.3% 16% 9.7% 0% 4.0%
ε 0% 0.4% 0.2% 0.3% 10,10%
MD 34.2% 16.2% 45.1% 4.5% 0%
H 56.7% 31.1% 8.1% 3.8% 0.3%
S 24.6% 21.1% 15.6% 19.1% 19.7%
EX 1.2% 30.6% 20.8% 28.0% 19.4%
P 3.6% 51.9% 30% 12,50% 2%
Q 7.1% 75.6% 14.2% 0% 3,10%
KL 0.8% 48.2% 39.1% 11.9% 0%
Y 25.2% 35.9% 27.1% 8.2% 3.6%

The ω ratio for each branch was estimated using branch specific codon substitution models in PAML.

Serbielle et al.

Serbielle et al. BMC Evolutionary Biology 2012 12:253   doi:10.1186/1471-2148-12-253

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