Table 1

π, θ-w, # haplotypes, haplotype diversity
Fester A-type alleles
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
East Coast 0.020 0.020 0.010 0.030 17 0.96
West Coast 0.010 0.010 0.010 0.010 13 0.90
Fester B1-type alleles
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
East Coast 0.010 0.030 0.010 0.010 8 0.95
Fester C-type alleles
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
East Coast 0.010 0.030 0.010 0.020 13 0.93
40S_3A
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.001 0.014 0.000 0.002 6 0.533
Quissett, MA 0.001 0.004 0.000 0.001 3 0.600
Sandwich, MA 0.002 0.011 0.000 0.002 3 0.833
Monterey, CA NA NA NA NA 1 0.000
Santa Barbara, CA 0.006 0.025 0.000 0.006 2 0.500
Seattle, WA 0.009 0.040 0.000 0.007 3 0.800
All populations 0.003 0.014 0.000 0.005 9 0.658
60S_L6
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.002 0.006 0.001 0.003 5 0.455
Quissett, MA 0.001 0.003 0.000 0.002 5 0.433
Sandwich, MA 0.002 0.005 0.000 0.002 5 0.547
Monterey, CA 0.008 0.015 0.006 0.008 3 0.511
Santa Barbara, CA 0.002 0.004 0.002 0.004 8 0.699
Seattle, WA 0.002 0.007 0.001 0.003 8 0.678
All populations 0.003 0.008 0.002 0.007 18 0.711
60S_L8
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.001 0.003 0.001 0.002 5 0.524
Quissett, MA 0.002 0.004 0.001 0.002 5 0.599
Sandwich, MA 0.002 0.003 0.001 0.002 3 0.833
Monterey, CA 0.001 0.003 0.000 0.001 2 0.500
Santa Barbara, CA NA NA NA NA NA NA
Seattle, WA 0.001 0.002 0.001 0.001 3 0.506
All populations 0.002 0.003 0.001 0.001 5 0.593
60S_L10
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.005 0.020 0.000 0.007 7 0.393
Quissett, MA 0.007 0.032 0.000 0.007 6 0.693
Sandwich, MA 0.003 0.014 0.000 0.004 2 0.333
Monterey, CA 0.009 0.039 0.000 0.009 6 0.929
Santa Barbara, CA 0.010 0.041 0.000 0.009 7 0.911
Seattle, WA 0.008 0.035 0.000 0.005 10 0.776
All populations 0.008 0.036 0.000 0.007 18 0.672
60S_L13
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.007 0.018 0.004 0.005 13 0.833
Quissett, MA 0.008 0.019 0.004 0.006 7 0.655
Sandwich, MA 0.006 0.016 0.004 0.007 2 0.500
Monterey, CA 0.003 0.009 0.001 0.002 3 0.644
Santa Barbara, CA 0.007 0.021 0.003 0.005 4 0.714
Seattle, WA 0.008 0.026 0.003 0.006 16 0.903
All populations 0.010 0.028 0.004 0.006 19 0.833
71kda
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.004 0.014 0.000 0.005 10 0.804
Quissett, MA 0.004 0.014 0.001 0.005 9 0.735
Sandwich, MA 0.006 0.023 0.001 0.006 13 0.896
Monterey, CA 0.009 0.037 0.000 0.007 5 0.867
Santa Barbara, CA 0.008 0.032 0.000 0.006 19 0.943
Seattle, WA 0.004 0.014 0.001 0.004 7 0.909
All populations 0.008 0.029 0.001 0.007 47 0.906
actin
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.004 0.017 0.000 0.005 12 0.879
Quissett, MA 0.006 0.025 0.000 0.005 14 0.931
Sandwich, MA 0.005 0.021 0.000 0.006 12 0.918
Monterey, CA 0.004 0.015 0.000 0.004 4 0.652
Santa Barbara, CA 0.005 0.022 0.000 0.005 18 0.954
Seattle, WA 0.005 0.020 0.000 0.004 6 0.818
All populations 0.005 0.022 0.000 0.007 44 0.924
ADP/ATP translocase
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.008 0.029 0.001 0.007 13 0.863
Quissett, MA 0.014 0.052 0.002 0.014 3 0.833
Sandwich, MA 0.005 0.020 0.000 0.005 3 0.833
Monterey, CA 0.020 0.082 0.000 0.020 2 1.000
Santa Barbara, CA NA NA NA NA NA NA
Seattle, WA 0.012 0.046 0.001 0.012 4 1.000
All populations 0.009 0.034 0.001 0.007 18 0.915
Hsp90
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.015 0.065 0.001 0.020 13 0.788
Quissett, MA 0.010 0.044 0.001 0.016 13 0.812
Sandwich, MA 0.018 0.079 0.001 0.012 7 0.911
Monterey, CA 0.002 0.008 0.000 0.002 8 0.909
Santa Barbara, CA 0.002 0.008 0.000 0.002 9 0.815
Seattle, WA 0.014 0.063 0.001 0.013 3 0.464
All populations 0.010 0.045 0.001 0.014 23 0.685
ma2_actin
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.003 0.013 0.000 0.004 9 0.831
Quissett, MA 0.004 0.016 0.000 0.004 8 0.857
Sandwich, MA 0.003 0.011 0.000 0.004 7 0.768
Monterey, CA 0.004 0.017 0.000 0.006 3 0.385
Santa Barbara, CA 0.004 0.016 0.000 0.004 4 0.458
Seattle, WA 0.003 0.016 0.000 0.003 4 0.542
All populations 0.005 0.019 0.000 0.006 13 0.777
mtCOI
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.009 0.031 0.002 0.016 4 0.491
Quissett, MA 0.007 0.035 0.002 0.010 5 0.405
Sandwich, MA 0.026 0.094 0.004 0.158 3 0.833
Monterey, CA 0.002 0.007 0.000 0.003 2 0.400
Santa Barbara, CA 0.004 0.015 0.002 0.010 6 0.468
Seattle, WA 0.025 0.105 0.002 0.018 4 0.711
All populations 0.021 0.093 0.002 0.013 11 0.725
vasa
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.004 0.011 0.001 0.004 6 0.733
Quissett, MA 0.020 0.080 0.002 0.020 7 0.800
Sandwich, MA 0.023 0.095 0.000 0.020 10 0.970
Monterey, CA 0.012 0.047 0.001 0.010 5 0.857
Santa Barbara, CA 0.025 0.097 0.003 0.020 8 0.859
Seattle, WA 0.013 0.055 0.000 0.011 5 0.861
All populations 0.022 0.088 0.002 0.026 23 0.750
Vigilin
Population π (All Sites) π (Synonymous) π (Nonsynonymous) Θ-w (per site) # Haplotypes Haplotype diversity
Falmouth, MA 0.011 0.037 0.004 0.017 9 0.934
Quissett, MA 0.023 0.080 0.007 0.017 15 0.980
Sandwich, MA 0.019 0.065 0.007 0.016 11 0.958
Monterey, CA 0.018 0.069 0.004 0.018 5 0.893
Santa Barbara, CA 0.018 0.070 0.004 0.016 23 0.938
Seattle, WA 0.018 0.064 0.004 0.017 5 0.822
All populations 0.024 0.088 0.006 0.016 55 0.971

Nydam and De Tomaso

Nydam and De Tomaso BMC Evolutionary Biology 2012 12:249   doi:10.1186/1471-2148-12-249

Open Data