Table 1 |
||||
| Putative branch points in salmonid mstn2 introns | ||||
| species | mstn2a Intron 1 | mstn2a Intron 2 | mstn2b Intron 1 | mstn2b Intron 2 |
| O. mykiss | NOT FOUND | GGCTGAC 919 (50) | TTCTAAC 484 (138) | NOT FOUND |
| TACTAAT 955 (86) | ||||
| O. tshawytscha | AACTGAC 457 (117) | GGCTGAC 982 (23) | TTCTAAC 443 (138) | NOT FOUND |
| TTCTAAC 478 (138) | ||||
| O. clarki | TTCTAAC 478 (138) | GGCTGAC 891 (23) | ||
| O. kisutch | TTCTAAC 479 (139) | NOT FOUND | TTCTAAC 484 (138) | NOT FOUND |
| O. keta | TTCTAAC 484 (138) | NOT FOUND | ||
| O. nerka | TTCTAAC 478 (138) | GGCTGAC 892 (23) | TTCTAAC 433 (138) | NOT FOUND |
| S. salar | TTCTAAC 481 (138) | GGCTGAC 895 (23) | TTCTAAC 484 (138) | NOT FOUND |
| Sv. fontinalis | TTCTAAC 361 (138) | NOT FOUND | ||
| C. lavaretus | TCCTAAC 463 (123) | NOT FOUND | ||
| C. clupeaformis | TTCTAAC 463 (123) | NOT FOUND | ||
| T. arcticus | TTCTAAC 424 (81) | NOT FOUND | ||
| T. thymallus | TTCTAAC 424 (81) | NOT FOUND | ||
Polymorphysms in the known consensus (TNCTRAY; N = any nucleotide, R = A or G, Y = C or T) are bold. Numbers represent the distance (bp) of the first nucleotide within putative sites from the initiator or the 5’ intron boundary (parenthesis). In some instances, two putative branch points were identified.
Lawson et al. BMC Evolutionary Biology 2012 12:202 doi:10.1186/1471-2148-12-202
