Research article
Evolutionary dynamics of rRNA gene clusters in cichlid fish
1 Bioscience Institute, Morphology Department, UNESP - Sao Paulo State University, Botucatu, SP, 18618-970, Brazil
2 Bioscience Institute, Biology Department, UNESP - Sao Paulo State University, Rio Claro, SP, Brazil
3 Institute of Biological Science and Health, UFMT - Federal University of Mato Grosso, Pontal do Araguaia, MT, Brazil
BMC Evolutionary Biology 2012, 12:198 doi:10.1186/1471-2148-12-198
Published: 5 October 2012Additional files
Additional file 1:
Title and description of data: Investigated Asian and African cichlids[68,69].
Format: PDF Size: 93KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 2:
Title and description of data: Investigated Neotropical cichlids.
Format: PDF Size: 96KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 3:
Title and description of data: Number of 5S and 18S rRNA gene copies retrieved from theOreochromis niloticusgenome at the BouillaBase database (http://www.bouillabase.org webcite).
Format: PDF Size: 78KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 4:
Title and description of data: Alignment of the 18S rRNA gene copies retrieved from theOreochromis niloticusgenome at the BouillaBase database (http://www.bouillabase.org webcite). The nucleotides are identified by different colors, and the black blocks under the alignment indicate the consensus sequence.
Format: PDF Size: 1.9MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 5:
Title and description of data: Alignment of the 5S rRNA gene copies retrieved from theOreochromis niloticusgenome at the BouillaBase database (http://www.bouillabase.org webcite). The nucleotides are identified by different colors, and the black blocks under the alignment indicate the consensus sequence.
Format: PDF Size: 2.4MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 6:
Title and description of data: Identified transposable elements (TEs) in the flanking regions (FRs) of 5S rRNA gene copies retrieved from theO. niloticusgenome and their similarity (%) level to sequences deposited in Repbase. d1, d2…, u1, u2… indicate the different copies detected. The position of the TE is indicated by “d” - downstream of the gene or “u” - upstream of the gene. R indicates reverse copies of the TE.
Format: PDF Size: 94KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional file 7:
Title and description of data: Identified transposable elements (TEs) in the flanking regions (FRs) of 18S rRNA gene copies retrieved from theO. niloticusgenome and their similarity (%) level to sequences deposited in Repbase. The position of the TE is indicated by “d” - downstream of the gene or “u” - upstream of the gene. d1, d2…, u1, u2… indicate the different copies detected. R indicates reverse copies of the TE.
Format: PDF Size: 88KB Download file
This file can be viewed with: Adobe Acrobat Reader
