Table 3

RNA-seq quantification of gene expression in heat shock proteins
Contig Idenitification Fold change % Divergence dN/dSRatio SD Accession SC Accession
SD SC
hsf 0.7 2.4 1.2 0.104 JW505571 JW525030
hspbeta-1 #1 1.0 0.74 2.8 0.163 JW504867 JW522977
hspbeta-1 #2 22.9* 4.5* 3.1 0.062 JW506232 JW525782
hspbeta-1 #3 24.6* 4.2* 2.8 0.262 JW506234 JW525781
hspbeta-1 #4 105.2* 4.7* 5.6 0.3 JW506233 JW525780
hspbeta-1 #5 4.9* 2.1 2.3 0.085 JW519143 JW525778
hsp10 0.97 0.44* 3.2 0.035 JW501904 JW520834
hsp16 9.8* 1.3 4 0.349 JW506236 JW525786
hsp20 #1 38.2* 3.0* 3.3 0.023 JW519178 JW525783
hsp20 #2 n/o 4.8* - - n/o N/A
hsp40 #1 1.9* 1.4 1.7 0 JW506223 JW525767
hsp40 #2 3.2* 1.8 3 0.032 JW506406 JW526009
hsp60 1.1 0.74 2.5 0 JW519415 JW521007
hsp67b2 #1 1.2 0.59* 8.7 0.029 JW506224 JW525770
hsp67b2 #2 0.88 0.46* 2 0.222 JW519141 JW525771
hsc70 1.9* 1.6 1.2 0 JW506426 JW525790
hsp70 #1 2.5* 1.3* 2.9 0.014 JW519142 JW525772
hsp70 #2 224.3* 7.9* 3.9 0.035 JW519350 JW526654
hsp70 #3 0.74 1.8 1.6 0 JW506218 JW525763
hsp70 #4 0.92 1.3 1.9 0 JW506217 JW525759
hsp70 #5 13.0* 3.8* 2.6 0.015 JW506905 JW526653
hsp70 #6 218.9* n/o - - JW506227 n/o
hsp70 #7 28.2* n/o - - JW506228 n/o
hsp70 #8 524.4* n/o - - JW506906 n/o
hsp70 #9 460.3* 7.3* 3.7 0 N/A N/A
hsp70 #10 n/o 8.5* - - n/o N/A
hsp70 #11 n/o 7.3* - - n/o N/A
hsp70 #12 n/o 5.1* - - n/o JW525760
hsp70 #13 n/o 9.6* - - n/o JW525773
hsp70 #14 n/o 8.9* - - n/o JW525774
hsp70 #15 6.1* 2.6 0 0.021 JW502097 JW521081
hsp70 #16 2.7 1.3 3 0.043 JW506226 JW526652
hsp70 #17 0.99 1.8 4.2 0.061 JW506216 JW525758
hsp70 #18 0.92 1.3 1.8 0 JW506217 JW525759
hsp70 interacting protein 41.6* n/o - - N/A n/o
hsp70/90 organizing protein 3.3* 0.83 2 0.023 JW506431 JW528118
hsp71 #1 88.7* 3.6 4.4 0 JW506229 JW533019
hsp71 #2 n/o 7.1* - - n/o JW525776
hsp90 #1 5.8* 3.3* 3.3 0.015 JW506231 JW525777
hsp90 #2 n/o 7.1* - - n/o N/A
hsp105 1.9 1.6 1.1 0 JW506426 JW525790
mtDNA hsp 37.0* n/o - - JW502693 n/o

Statistically significant changes indicated by an asterisk. Uncorrected percent sequence divergence and the non-synonymous (dN) to synonymous (dS) substitution ratio are shown for trimmed alignments. Gaps in the data due to missing orthologs are indicated as “n/o”.

N/A = contigs for which a NCBI accession was not created because their sequences were shorter than the minimum length allowed in a Trascriptome Shotgun Assembly (TSA) submission.

Schoville et al.

Schoville et al. BMC Evolutionary Biology 2012 12:170   doi:10.1186/1471-2148-12-170

Open Data