Table 4

Classification of unknown bHLH sequences
SeqId BLAST Mahal. Dist Kingdom (Prob)
Species Name (Common) Cov. iid Animal Fungi Plant
ECU95545.1 Ostreococcus lucimarinus (green algae) 93% 90% 7.60 13.6 11.0 Animal
ECR14344.1 Sus scrofa (pig) 87% 32% 4.90 9.18 8.22 Animal
ECB02340.1 Micromonas sp. RCC299 (green algae) 85% 68% 7.58 8.58 4.93 Plant
ECZ39823.1 Ostreococcus tauri (green algae) 79% 53% 9.14 6.53 3.51 Plant
EBY00838.1 Monosiga brevicolli (choanoflagellates) 49% 66% 3.34 8.02 14.3 Animal
EBG07815.1 Methanocaldo-coccus vulcanius 38% 29% 1.62 9.99 13.2 Animal
EBZ65459.1 Branchiostoma belcheri (Japanese lancelet) 36% 38% 2.31 10.2 12.1 Animal
ECI19714.1 Daphnia pulex (common water flea) 34% 44% 7.36 2.60 12.0 Fungal
ECP37863.1 Aedes aegypti (yellow fever mosquito) 30% 37% 4.63 4.81 8.19 Animal
EBW92904.1 Cryptococcus neoformans (basidiomycetes) 15% 38% 10.9 7.74 2.11 Plant

NOTE.–Ten unknown bHLH sequences from a marine environmental sample as identified by InterPro. The attributes of the best BLAST hit are reported (species, coverage, identity). The results of the CVA{all} are also reported along with the distance of the bHLH sequence to Plant, Animal, and Fungal Kingdoms. The predicted Kingdom of origin is also reported.

Sailsbery and Dean

Sailsbery and Dean BMC Evolutionary Biology 2012 12:154   doi:10.1186/1471-2148-12-154

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