Table 2

Indices of genic diversity in Riftia pachyptila samples.

Locality


Locus

N27

N21

N9

GAR

S7

S11

S17

S32


Cytb n1

33

44

19

17

17

18

14

9

No. alleles (a)

1

4

2

2

2

2

1

1

Gene diversity (HS)

0.211

0.189

0.337

0.214

0.108

0

0

Rpt 46.1 n

56

98

38

36

36

38

34

16

No. alleles (a)

4

4

3

3

2

3

2

3

Gene diversity (H)

0.674

0.660

0.647

0.446

0.157

0.198

0.258

0.242

Fixation index (FIS)

0.155

0.073

0.108

0.200

-0.063

-0.067

0.324

-0.037

Rpt 84.1 n

62

104

38

40

36

42

40

18

No. alleles (a)

4

6

4

4

3

2

2

2

Gene diversity (H)

0.632

0.650

0.494

0.272

0.475

0.136

0.224

0.111

Fixation index (FIS)

-0.124

-0.067

-0.068

-0.095

0.304

-0.053

-0.118

0.000

ATPSĪ± n

54

106

38

40

38

21

38

18

No. alleles (a)

2

2

2

2

1

1

1

1

Gene diversity (H)

0.492

0.374

0.149

0.445

0

0

0

0

Fixation index (FIS)

0.098

0.092

-0.059

0.309

Pr(total FIS = 0)

0.404

0.600

0.383

0.255

0.176

0.230

0.461

1.000

Mean of HS

0.450

0.474

0.370

0.375

0.211

0.110

0.121

0.082

s.d. of HS

0.310

0.219

0.240

0.086

0.197

0.083

0.140

0.081

Total alleles (A)

11

16

11

11

8

8

6

7

Allelic richness (a') 4

2.37

2.89

2.50

2.57

1.90

1.68

1.48

1.72

Private alleles 4

0.14

0.65

0.08

0.40

0.23

0.11

0.00

0.25


1 Number of gene sequences.

4 Rarefaction estimates of mean allelic richness and mean number of private alleles per locus.

Coykendall et al. BMC Evolutionary Biology 2011 11:96   doi:10.1186/1471-2148-11-96

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