Table 2

Transposable Elements (TEs) discovered in the present study

Intron Fragments

Species

Transposable Elements (TEs)


Species-specific

Orthologous



TEs

Class

Length(bp)

TEs

Class

Length(bp)


Cidea1

Martes penanti

SINEC_b2

SINE/tRNA-Lys

192

L1_Canid_

LINE/L1

54-82

Mephitis mephitis

SINEC_b1

SINE/tRNA-Lys

188

Meles meles

SINEC_b1

SINE/tRNA-Lys

194

Arctonyx collaris

SINEC_b2

SINE/tRNA-Lys

194


Coro1c-4

Tigger12c

DNA/TcMar-Tigger

56-59

MIRb

SINE/MIR

93-112


Coro1c-5

Lutra lutra

SINEC_b1

SINE/tRNA-Lys

187

SINEC_old

SINE/tRNA-Lys

104-107

L1ME4a

LINE/L1

65-67


Guca1b-3

MIR

SINE/MIR

58-63


Ociad1-4

Mephitis mephitis

SINEC_b2

SINE/tRNA-Lys

268

MIRc

SINE/MIR

92-122

Martes flavigula/Martes zibellina/Gulo gulo/Martes foina/Martes amaricana/Martes penanti

SINEC_b1

SINE/tRNA-Lys

175-187


Plod2-14

Raccoon/Kinkajou

SINEC_b1

SINE/tRNA-Lys

192-195

Kanga1a

DNA/TcMar-Tc2

129-188

Kanga1c

DNA/TcMar-Tc2

81-92


Ssr1-5

Ailurus fulgens

SINEC_b1

SINE/tRNA-Lys

196


Tbc1d7-6

MIR

SINE/MIR

134-195


Tinagl1-1

Mephitis mephitis/Ailurus fulgens

MIR3

SINE/MIR

72-76

MIR

SINE/MIR

49-64


Tinagl1-3

MIR

SINE/MIR

85-87


Wasf1-3

L2c

LINE/L2

85-90


Wasf1-6

MER58A

DNA/hAT-Charlie

197


Fgb-4

Taxidea taxus

SINEC_b1

SINE/tRNA-Lys

199

Lutra lutra

SINEC_b2

SINE/tRNA-Lys

187


Fgb-7

Mephitis mephitis

SINEC_b1

SINE/tRNA-Lys

193

MIRb

SINE/MIR

196-198

Mephitis mephitis

SINEC_b2

SINE/tRNA-Lys

193


Ttr-1

SINEC_b1

SINE/tRNA-Lys

166-193


Yu et al. BMC Evolutionary Biology 2011 11:92   doi:10.1186/1471-2148-11-92

Open Data