Back to the sea twice: identifying candidate plant genes for molecular evolution to marine life
1 Evolutionary Bioinformatics, Institute for Evolution and Biodiversity, University of Muenster, Huefferstrasse 1, D48149 Muenster, Germany
2 IRSI-Caixa Fundation, Hospital Universitari Germans Trias I Pujol, Crta de Canyet s/n 08916 Badalona, Spain
3 Leibniz-Institut fuer Meereswissenschaften IFM-Geomar, Duesternbrooker Weg 20, D24105 Kiel, Germany
4 Dept. Marine Benthic Ecology and Evolution, Centre for Ecological and Evolutionary Studies, University of Groningen, Centre for Life Sciences, Nijenborgh 7, 9747 AG Groningen, The Netherlands
5 Stazione Zoologica A Dohrn, Villa Comunale, 80121 Naples, Italy
BMC Evolutionary Biology 2011, 11:8 doi:10.1186/1471-2148-11-8Published: 12 January 2011
Additional file 1:
OrthoMCL cluster composition after clustering two seagrass EST datasets and 8 full angiosperm genomes.
Format: CSV Size: 36KB Download file
Additional file 2:
Aligned proteins of each OrthoMCL cluster, produced with MUSCLE.
Format: GZ Size: 158KB Download file
Additional file 3:
Aligned nucleotide (CDS) sequences of each OrthoMCL cluster, produced with PAL2NAL.
Format: GZ Size: 334KB Download file
Additional file 4:
CODEML output of the branch-site test for positive selection for each of the three tested seagrass branches.
Format: GZ Size: 5.9MB Download file
Additional file 5:
Results of the GeneOntology (GO) enrichment analysis, testing the PSGs of each branch against all genes tested for positive selection.
Format: CSV Size: 3KB Download file