Contig sequence alignment of the 3'RR of vertebrate species with completed genome sequence. This figure shows the region chr12:114,459,657-114,497,890 of the UCSC Mouse Genome Browser (mm9 draft). The comparative genomic tracks were inspected and the graphic was edited as in this figure. The species common names are listed in the first column on the left. The black blocks in the "Mouse main elements" section localize the positions of the chosen tags, mapped by the BLAT tool of the site. The colored blocks in the "Comparative Genomics" section show the most similar region in each genome of the species listed, versus the mouse genome. The color of each block represents a portion of a chromosome (see the chromosome color legend below the graphic) of the species similar to that portion of the mouse chromosome 12. The "RepeatMasker" and "Tandem Repeat Finder" sections show the position of repeats identified by the two homonymous algorithms in this portion of mouse genome.
D'Addabbo et al. BMC Evolutionary Biology 2011 11:71 doi:10.1186/1471-2148-11-71