Table 2 |
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|
The p-values of the approximately unbiased test and weighted or unweighted Kishino-Hasegawa and Shimodaira-Hasegawa tests are provided as well as the bootstrap and Bayesian posterior probabilities of the selected topology. |
|||||||||||
|
Test |
rank |
item |
obs |
au |
np |
bp |
pp |
kh |
sh |
wkh |
wsh |
|
|
|||||||||||
|
A. |
1 |
A1 |
-119.3 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
|
2 |
A3 |
119.3 |
<0.001 |
<0.001 |
0 |
<0.0001 |
0 |
0 |
0 |
0 |
|
|
3 |
A2 |
121.3 |
<0.001 |
<0.001 |
0 |
<0.0001 |
0 |
0 |
0 |
0 |
|
|
|
|||||||||||
|
B. |
1 |
B1 |
-5.0 |
0.902 |
0.882 |
0.883 |
0.993 |
0.876 |
0.926 |
0.876 |
0.974 |
|
2 |
B3 |
5 |
0.01 |
0.01 |
0.117 |
0.007 |
0.124 |
0.501 |
0.124 |
0.237 |
|
|
3 |
B2 |
178.4 |
<0.001 |
<0.001 |
0 |
<0.001 |
0 |
0 |
0 |
0 |
|
|
|
|||||||||||
|
C. |
1 |
C1 |
-554.2 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
|
2 |
C2 |
554.2 |
<0.001 |
<0.001 |
0 |
<0.001 |
0 |
0 |
0 |
0 |
|
|
|
|||||||||||
|
D. |
1 |
D2 |
-291.8 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
1.000 |
|
2 |
D1 |
291.8 |
<0.001 |
<0.001 |
0 |
<0.001 |
0 |
0 |
0 |
0 |
|
|
|
|||||||||||
|
Tested alternative topologies are shown in Figure 2. Obs = observed log-likelihood difference to the best topology; au = approximately unbiased; np = bootstrap probability of the topology (i.e., the probability that the given topology has the largest likelihood in 10 scaled sets of 10,000 bootstrap replicates); bp = np with 10 non-scaled sets of 10,000 bootstrap replicates; pp = Bayesian posterior probabilities of the model; kh = Kishino-Hasegawa; sh = Shimodeira-Hasegawa; wkh = weighted KH; wsh = weighted SH. |
|||||||||||
|
Vilstrup et al. BMC Evolutionary Biology 2011 11:65 doi:10.1186/1471-2148-11-65 |
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