Table 1

Nucleotide diversity and neutral test at OsAMT1;1

Test set a

Entire sequenced region (2688 bp)

Coding region (1494 bp)

Non-coding region (1194 bp)




S

π×103

θ×103

D1

D2

S

π×103

θ×103

D1

D2

S

π×103

θ×103

D1

D2


All (n = 216)

32

0.37

2.01

-2.33**

-2.01

10

0.16

1.12

-2.04*

-0.10

22

0.63

3.13

-2.15**

-2.57*

O. rufipogon (n = 19)

26

1.72

2.78

-1.59

-0.57

7

0.99

1.34

-1.22

0.79

19

2.65

4.60

-1.62

-1.16

O. sativa (n = 190)

7

0.04

0.45

-1.93*

-3.58**

1

0.03

0.11

-0.77

0.45

6

0.06

0.87

-1.89*

-4.08**

Indica (n = 102)

6

0.06

0.43

-1.90*

-3.67**

1

0.05

0.13

-0.69

0.49

5

0.08

0.81

-1.90*

-4.29**

Japonica (n = 85)

1

0.02

0.07

-0.90

0.50

0

0

0

NA

NA

1

0.04

0.17

-0.91

0.50


a n in parentheses is the number of accessions used; S, number of segregating sites; π, nucleotide diversity per site; θ, Watterson's estimator; D1, Tajama's D; D2, Fu and Li's D*; NA, not applied; *, ** significant at 0.05 and 0.01(or 0.02) level for Tajama's D (or Fu and Li's D*), respectively.

Ding et al. BMC Evolutionary Biology 2011 11:61   doi:10.1186/1471-2148-11-61

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