Table 2

Number of TCS genes in different families encoded by Lactobacillaceae

Strain

Families


AraC

CitB

NarL

LytR

LytR

OmpR

YcbB

I

IV

II

I

HPK10

IIIA

IV


L. acidophilus NCFM

0

0

0

0

4

12

0

L. brevis ATCC 367

0

2

0

0

31

14

2

L. casei BL23

0

2

4

0

32

24

0

L. casei ATCC 334

0

2

4

0

32

24

0

L. delbrueckii subsp. bulgaricus ATCC 11842

0

0

0

0

12

112

0

L. delbrueckii subsp. bulgaricus ATCC BAA-365

0

0

0

0

2

12

0

L. fermentum IFO 3956

0

0

2

0

0

93

13

L. gasseri ATCC 33323

0

0

0

0

0

10

0

L. helveticus DPC 4571

0

0

0

0

0

8

0

L. johnsonii NCC533

0

0

2

0

4

12

0

L. plantarum WCFS1

2

0

4

0

103,4

12

0

L. reuteri DSM 20016

0

0

13

2

0

133

13

L. reuteri JCM 1112

0

0

33

2

0

133

13

L. sakei 23 K

0

0

32

0

32

12

0

L. salivarius UCC118

0

0

2

0

4

10

0

Leuconostoc citreum KM20

0

0

0

0

12

12

0

Lc. mesenteroides subsp. mesenteroides ATCC 8293

0

0

2

0

4

132

0

Oenococcus oeni PSU-1

0

0

0

2

0

10

0

Pediococcus pentosaceus ATCC 25745

0

0

2

2

2

10

13


Total

2

6

29

8

44

241

6


1 Gene cluster containing one RR and two HKs.

2 One incomplete TCS (pseudogene).

3 One incomplete TCS (orphan).

4 One gene cluster containing two RR and one HK.

Zúñiga et al. BMC Evolutionary Biology 2011 11:34   doi:10.1186/1471-2148-11-34

Open Data