Table 1

Number of SNPs and average derived-allele frequency (DAF) for different mutation types in different annotation categories

Non-CpG island region

CpG island region


Intergenic

Genic

Intergenic

Genic


Mutation type*

SNPs

DAF

SNPs

DAF

SNPs

DAF

SNPs

DAF


All

88447

0.324

79241

0.317

1053

0.34

3120

0.316

Tsd

3752

0.314

4722

0.303

158

0.301

461

0.3

C-Tsd

22539

0.311

19525

0.303

286

0.324

861

0.309

Tsg

10235

0.353

9396

0.344

100

0.406

240

0.373

C-Tsg

21567

0.33

19866

0.326

138

0.401

403

0.339

Tvd

419

0.333

400

0.322

66

0.312

196

0.325

C-Tvd

14100

0.317

11667

0.309

140

0.337

461

0.3

Tvg

3415

0.306

3345

0.304

50

0.385

169

0.309

C-Tvg

12481

0.33

10935

0.319

108

0.346

354

0.302


* The symbols used here are identical to that in the text, with the prefix of C- denoting the corresponding control dataset.

Li and Chen BMC Evolutionary Biology 2011 11:3   doi:10.1186/1471-2148-11-3

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