a) The FEL Clade analysis indicated the 18 codons from Physalis Clade A (see Figure 1) that have significantly greater dN/dS values using LRT's and p-values ≤ 0.05 and the 10 sites estimated to have greater dN/dS in Solanum (sites listed in Table 3). b) Physalis Clade C shows 9 positively selected Physalis sites with only 2 overlapping with Clade A (see also Table 3). Under this model 7 Solanum sites show higher dN/dS. The majority of sites favoring greater positive selection in Solanum are found in the HVa and HVb regions. Only dN values are reported for Clades A and C (black bars) and Solanum (gray bars) as dS values are shared across genera.
Paape and Kohn BMC Evolutionary Biology 2011 11:243 doi:10.1186/1471-2148-11-243