Table 1

Diversity measures and neutrality tests for the Zp2 and the Zp3 sequence data*

Gene

Species

N

h

Hd

S

π (%)

θw (%)

Tajima's D

Fu and Li's D

Fu and Li's F

Fay and Wu's H


Zp2

Bos taurus

88

2

0.391

2

0.252

0.128

1.532

0.694

1.111

-1.426

Bos indicus

68

3

0.465

4

0.375

0.269

0.835

0.982

1.101

-1.346

Bos frontalis

12

4

0.773

5

0.635

0.534

0.699

1.227

1.168

0.515

Bos grunniens

22

3

0.558

3

0.222

0.265

-0.423

-1.427

-1.344

0.329

Bison bonasus

4

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Bubalus bubalis

10

2

0.356

1

0.115

0.114

0.015

0.739

0.667

0.267

Syncerus caffer

18

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Ovis aries

2

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Capra hircus

2

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Zp3

Bos taurus

88

3

0.365

2

0.134

0.142

-0.088

0.694

0.532

-0.907

Bos indicus

68

7

0.554

7

0.284

0.524

-1.146

0.459

-0.816

0.627

Bos frontalis

12

4

0.712

4

0.600

0.476

0.908

1.227

1.353

0.788

Bos grunniens

22

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Bison bonasus

4

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Bubalus bubalis

10

5

0.756

5

0.592

0.636

-0.279

-0.527

-0.710

0.889

Syncerus caffer

18

2

0.111

1

0.040

0.105

-1.165

-1.562

-1.690

0.105

Ovis aries

2

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.

Capra hircus

2

1

0

0

0

0

N.A.

N.A.

N.A.

N.A.


* N = number of chromosomes; h = number of haplotypes; Hd = haplotype (gene) diversity; S = number of segregating sites; π = nucleotide diversity (per site); θw = Watterson's estimator (per site); N.A. = not applicable. All P-values for Tajima's D, Fu and Li's D and F are > 0.10; All P-values for Fay and Wu's H are > 0.05.

Chen et al. BMC Evolutionary Biology 2011 11:24   doi:10.1186/1471-2148-11-24

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