Table 1

Coordinates for the Otop1 and Ush1g-Otop2-Otop3 loci on the UCSC Genome Browser (genome.ucsc.edu).

Group

Species

Name

Assembly

Build

Otop1 locus

Ush1g-Otop2- Otop3 locus

Placental mammals


Primate

Humana

Homo sapiens

hg17

v.35.1

Chr4:4309000-4438200a

Chr17:70368500-70574600

Chr4:9457200-9718300a

Primate

Chimpanzeea

Pan troglodytes

panTro2

v.2.1

Chr4:4274000-4409000a

Chr17:74415000-74633000

Chr4:9519000-9791000a

Primate

Orangutan

Pongo pygmaeus

ponAbe2

v.2.0.2

Chr4:9065000-9474000

Chr17:64862000-65072000

Primate

Macaque

Macaca mulatta

rheMac2

v.1

Chr5:4455000-4928000

Chr16:70135000-70333000

Primate

Marmoset

Callithrix jacchus

calJac1

v.2.0.2

Ctg_6604:8000-119000

Ctg_751:460000-660000

Primate

Galago

Otolemur garnettii

Table 2c

Table 2c

Table 2c

Rodent

Mouse

Mus musculus

mm9

v.37

Chr5:38602000-38894000

Chr11:115128000-115293000

Rodent

Rat

Rattus norvegicus

rn4

v.3.4

Chr14:77872000-77739000

Chr10:105341000-105511000

Rodent

Guinea pig

Cavia porcellus

cavPor3

v.1

Sc_85:1472000-1733000

Sc_76:158000-328000

Odd-toed ungulate

Horse

Equus caballus

equCab1

v.1

Chr3:105657000-106026000

Chr11:5605000-5775000

Even-toed ungulate

Cow

Bos taurus

bosTau4

v.4.0

ChrUn.004.380:64500-130400

Table 2c

Carnivore

Cat

Felis catus

felCat3

v.3

Scaffold_217612:1-354000

Sc_213691:103000-208000

Carnivore

Dog

Canis familiaris

Table 2c

Table 2c

Table 2c

Insectivore

Hedgehog

Atelerix albiventris

Table 2c

N/Ad

Table 2c

Dasypodidae

Armadillo

Dasypus novemcinctus

Table 2c

Table 2c

Table 2c

Non-placental mammals

Marsupial

Opossum

Monodelphis domestica

monDom4

v.1

Chr5:220402000-221007000

Chr2:214376000-214751000

Monotreme

Platypus

Ornithorhynchus anatinus

Table 2c

Table 2c

N/Ad

Non-mammals

Bird

Chicken

Gallus gallus

galGal3

v.2.1

Chr4:81337000-81509000

Chr18:10466000-10598000

Amphibian

Xenopus

Xenopus tropicalis

xenTro2

v.4.1

Sc_441:1-372000

Table 2c

Reptile

Lizard

Anolis carolinensis

AnoCar

v.1.0

Sc_326:248900-318100

Sc_19:2503800-2589100

Teleost fish

Sticklebackb

Gasterosteus aculeatus

gasAcu1

v.1

ChrXVII:8677000-8781000

ChrUn:25945000-25970000b

ChrXI:8905000-10436000b

Teleost fish

Zebrafish

Danio rerio

Zv8/danRer6

Chr14:404900-441700

Chr3:55047100-55115900 b

Chr3:58856300-58928900 b

Teleost fish

Medaka

Oryzias latipes

oryLat2

v.1.0

Chr5:15877500-15911600

Chr8:10213600-10262900 b

Chr8:11920390-11941600 b

Teleost fish

Tetraodon

Tetraodon nigroviridis

tetNig2

v8

Chr11:1818700-1842400

Chr3:10856000-10898300 b

Chr3:9834800-9861700 b

Teleost fish

Fugu

Takifugu rubripes

JGI 4.0/fr2

v4.0

ChrUn:188417600-188434600

ChrUn:188238700-188275500 b

ChrUn:273950651-273965439 b


aThe Otop1 locus actually resides in two loci in these hominoid species (with respect to the mouse reference sequence; see text for details).

bThe Ush1g-Otop2-Otop3 locus is duplicated in teleost fish (with respect to the mouse reference sequence; see text for details).

cBacterial Artificial-Chromosome (BAC) clones spanning one or both of the targeted genomic regions were isolated and sequenced (see Table 2 for details and GenBank accession No.).

d N/A, not available: neither BAC- nor whole-genome-derived sequence of the targeted genomic regions could be obtained.

Hurle et al. BMC Evolutionary Biology 2011 11:23   doi:10.1186/1471-2148-11-23

Open Data