Genealogical tree and skyline plots of coalescent statistics for 624 China and Southeast Asia samples of HA sequences of influenza A (H3N2). The tree shown represents the maximum posterior tree sampled over the course of the MCMC analysis. Vaccine strains are shown on the tree as colored points and included regardless of geographic origin. For coalescent statistics, TMRCA, diversity and Neτ, solid lines represent mean values and gray outlines represent 95% credible intervals across MCMC replicates. TMRCA, diversity and Neτ are measured in units of years.
Bedford et al. BMC Evolutionary Biology 2011 11:220 doi:10.1186/1471-2148-11-220