Table 3 |
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|
Prediction of the nuclear and mitochondrial targeting sequences in tRNase ZLs from flowering plants |
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|
Protein name |
From |
Nuc |
Mito |
Predicted mitochondrial targeting sequences |
|
|
||||
|
AcoTrz3 |
AcoTrzL1 |
N |
- |
|
|
AcoTrz4 |
AcoTrzL2 |
- |
M |
MPQISSNLKLFFSKTNHSPLFQFSFKASFCSSFLLSSKTPYKPLSSVTVISSSSSSSSSSRKGPKFPPLRSRS (73) |
|
AlyTrz3 |
AlyTrzL1 |
N |
M |
MINSMPYLHKNLRLLLLLSSKSSPFPLSLRPFSPRSFSLSTLFS (44) |
|
AlyTrz4 |
AlyTrzL2 |
N |
M |
MLTSSMPHRHVPQNLSLFGFSPLKSSSFALFLRPFSLYPPIFASSSPSPSRRPPRTAGYRRS (62) |
|
AthTrz3 |
AthTrzL1 |
N |
M |
MINSMPYLHKNLRLLRLLSSKSSPFPLSLRPFSPRSFSLSTLFS (44) |
|
AthTrz4 |
AthTrzL2 |
N |
M |
MLTSSMPQNLSLFGFSPLKSSSFALILRPFSLYPPIFASSSPAPSRRPPRTAGYRRSGPSPPRRK (65) |
|
BdiTrz3 |
BdiTrzL1 |
- |
M |
MPQVAAPLRLLLPLSQTLAPPAPLLHLSRRLLSFCSPASFRRAASLRALAYRRSRHPEPRRG (62) |
|
CpaTrz3 |
CpaTrzL1 |
N |
M |
MFLIYPNLRLLLNPPLFLFSKPNSTPLSLFTVFASSSHKRHRSVSYRDSPFGLHRRRRNFTTFKERD (67) |
|
CclTrz3 |
CclTrzL1 |
N |
M |
MPFITPNLRLLFSSSSSSLFPLKLSVPLLSTKPTNRHRSLFTILSYSKRQRSTPFPQQNQRRN (63) |
|
CsiTrz3 |
CsiTrzL1 |
N |
M |
MPFITPNLRLLFSSSSSSSLFPLKLSVPLLSTKPTNRHHSLFTILSYSKRQRSTPFPQQNQRRN(64) |
|
CsaTrz3 |
CsaTrzL1 |
N |
M |
MPLPHLSTLRFLFFSPSKLPFSPSLYSPKSHSLFTVLASSPPKRRRSATAPPSLNFKRRN (60) |
|
EgrTrz3 |
EgrTrzL1 |
N |
M |
MPCVYSNLRLLFSSSATAAAATATAAASPFLSPLKLKLRRPSSSSSAFPLLPLPPLSSLRS (61) |
|
GmaTrz3 |
GmaTrzL1 |
N |
M |
MAQVSKFGYFLLHSSLPKPSNIQFRSLLTVLASSSKRHRRK (41) |
|
GmaTrz4 |
GmaTrzL2 |
N |
M |
MAQVSKFGHLLLHSSLPKPSNSNIQFRSLLTLLASSSKRHRSIPPFRRKS (50) |
|
MesTrz3 |
MesTrzL1 |
N |
M |
MPQISNLRFLLSPIKPSLPFPFSKPKPYSLFTVLCSSSSSRRHRTTPNHQSLNFRSRS (58) |
|
MesTrz4 |
MesTrzL2 |
- |
M |
MPNVLNFKLCLSDLLTQCCKICLQHYILTFSSLSHVLVSGKLQSSNPQTYFSINNPLPRSKNSRT (65) |
|
MtrTrz3 |
MtrTrzL1 |
N |
M |
MAQILNFRNFLFLPSYKPTTHFRLRFLSTLVSSSSRRSNINAPPLHLRRRS (51) |
|
MguTrz3 |
MguTrzL1 |
N |
M |
MPQSTNLRLLLSSANCHRRHPFSAASNFFPKHLSFSSSFQFFLKPQFKTREIPLLFATFSSYSKKPYATNNNSNNNNKNSRSFNRN (86) |
|
OsaTrz3 |
OsaTrzL1 |
- |
M |
MPQLPSPLRRLLPLSQTLAAATPAPLLHLSRRLFSSSSSPSPSPSPRAACLRALAYRGGQAGGGGRRGHHNNLLRRG (77) |
|
PtrTrz3 |
PtrTrzL1 |
N |
M |
MSHISNLRLLLSPLNPTLRFPFSSKHRPYSLLTILSSSSPYPKRRHRTTPNHPSLNFRSRS (61) |
|
PpeTrz3 |
PpeTrzL1 |
N |
M |
MPQVTNLRLLFFSPFPRLSLSSLSFKPLKPRTLFTALASSYRKRHRPIPNQSPNTGARN (59) |
|
SitTrz5 |
SitTrzL1 |
- |
M |
MPQVAAPLRLLLPLSQTLAPAPLLHLSRRLFTSSSPSFGRAASLRALAYRRHHHPRRGSSTLRK (64) |
|
SbiTrz4 |
SbiTrzL1 |
N |
M |
MPQVAGPLRRLLPLSQTLASAPAPLLHLSRRLLSSCSPASFGRAASLRALAYRRRRHPEPRRG (63) |
|
VviTrz3 |
VviTrzL1 |
N |
M |
MPHLTSFRLLYCSPLLSPFKSPFLSFSTLSKSKSPLLNPPSFFTVLSSSSGRYPKLRRHPHHLRRRN (67) |
|
ZmaTrz3 |
ZmaTrzL1 |
N |
M |
MPQVAAPLRLLLPLSQTLAAPAPLLHHSRRLLSSCPASLSRAAGLRALAYRRRRHTEPRRG (61) |
|
|
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|
The putative nuclear localization signals were predicted using PSORT http://psort.hgc.jp/form.html webcite, while the putative mitochondrial targeting signals were predicted using MITOPROT http://ihg2.helmholtz-muenchen.de/ihg/mitoprot.html webcite. Nuc: stand for the nucleus; Mito: mitochondria. N indicates nuclear localization and M denotes mitochondrial localization. "-", the localization could not be predicted. The numbers refer to amino acid positions starting from the N-terminus. |
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|
Fan et al. BMC Evolutionary Biology 2011 11:219 doi:10.1186/1471-2148-11-219 |
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