Table 2

Amino acid similarities and identities of some protein sequences deduced from entries of metagenomic study with selected geminivirus CPs

Alignment

Query sequence

Most similar geminivirus CP

Identity

Similarity

length


JCVIPEP1105104354663

Q5UAE8

Indian cassava mosaic virus

23.4

39.7

250

JCVIPEP1105107973141

A7UGA6

Sweet potato leaf curl virus

22.4

36.6

183

JCVIPEP1105096364985

A7UGA6

Sweet potato leaf curl virus

22.8

37.6

250

JCVIPEP1105092295201

C7TPA7

Mung bean yellow mosaic India virus

27.3

44.6

139

JCVIPEP1105092294601

Q645H3

Corchorus yellow vein virus

18.5

32.4

222

JCVIPEP1105092292339

Q19LG2

Tomato golden mottle virus

27.6

42.9

217

SNTV (PDBID:2BUK)

Q4LAS1

Wheat dwarf virus

18.7

32.2

267


The amino acid similarities and identities of the SNTV CP is also included for comparison.

Saccardo et al. BMC Evolutionary Biology 2011 11:185   doi:10.1186/1471-2148-11-185

Open Data