Additional file 9.

Table S5. Analysis of congruence between the chromosomal inversion plus per gene phylogeny and CHC data. The reconstructed phylogeny used in the character evolution analysis represents the first out of six most parsimonious trees and was based on 13 populations/species of the D. buzzatii cluster. The species of the D. mojavensis cluster were not included in this analysis. CDF analysis was based on 21 CHC peaks to generate the canonical variates (CVs). LP = linear parsimony; SCPG = squared-change parsimony gradual; and SCPP = squared-change parsimony punctuated. See Table 4 for details. P-values in bold represent significant values after false discovery rate (FDR) analysis. See Additional File 12: Table S8 for FDR calculations.

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Oliveira et al. BMC Evolutionary Biology 2011 11:179   doi:10.1186/1471-2148-11-179