Table 1

List of HLA and non-HLA SNPs from the Fellay et al. [11] 'top hits' among European Americans (EA) and the Pelak et al. [13] 'top hits' among African Americans (AA) examined in this study.

Chromosome

Position in bases

Nearest Gene


HLA SNPs - EA

rs2395029

6

31,539,759

HCP5

rs9264942

6

31,332,359

HLA-C

rs259919

6

30,133,482

ZNRD1

rs9468692

6

30,227,869

TRIM40

rs9266409

6

31,444,547

HLA-B

rs8192591

6

32,293,774

NOTCH4


HLA SNPs - AA

rs2523608

6

31,430,538

HLA-B

rs34548063

6

32,047,802

STK19, DOM3Z

rs2523933

6

30,040,271

HLA-A, HCG9

rs2844538

6

31,456,858

HLA-B

rs2596503

6

31,428,789

HLA-B


Non-HLA SNPs - EA

rs12185555

2

227,559,317

IRS1

rs12557137

X

31,348,807

DMD

rs9677779

2

71,903,036

DYSF

rs11800642

1

212,909,744

NSL1

rs3735118

7

2,944,317

CARD11

rs7904001

10

66,762,723

None within 1 Mb

rs16959323

17

10,006,097

GAS7

rs5954635

X

141,450,842

MAGEC2

rs10073652

5

12,786,980

None within 1 Mb

rs6640729

X

11,346,716

ARHGAP6


Non-HLA SNPs - AA

rs454422

20

5,891,693

MCM8

rs6948404

7

36,577,018

AOAH

rs558718

19

7,815,883

EVI5L

rs1357339

11

80,532,023

None within 1 Mb

rs1413191

13

92,011,477

GPC5

rs2593321

3

22,097,400

ZNF659

rs1116084

8

22,406,934

PPP3CC

rs2789066

6

121,141,836

C6orf170

rs430374

18

42,499,453

ST8SIA5

rs11652146

17

44,774,660

ZNF652


Klimentidis et al. BMC Evolutionary Biology 2011 11:173   doi:10.1186/1471-2148-11-173

Open Data