Open Access Research article

Evolution of endogenous retroviruses in the Suidae: evidence for different viral subpopulations in African and Eurasian host species

Fabrícia F Nascimento15, Jaime Gongora1, Michael Charleston2, Michael Tristem3, Stewart Lowden4 and Chris Moran1*

Author Affiliations

1 Faculty of Veterinary Science, The University of Sydney, NSW 2006, Australia

2 School of Information Technologies and Centre for Mathematical Biology, The University of Sydney, NSW 2006, Australia

3 Division of Biology, Imperial College London, Silwood Park, Ascot, Berkshire SL5 7PY, UK

4 Veterinary Health Research Pty Ltd. Armidale, NSW 2350, Australia

5 Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Avenida Carlos Chagas Filho, 373, Rio de Janeiro 21941-902, Brazil

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BMC Evolutionary Biology 2011, 11:139  doi:10.1186/1471-2148-11-139

Published: 24 May 2011

Additional files

Additional file 1:

GenBank accession numbers for sequences included in this study. List of GenBank sequences used in phylogenetic analyses

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Additional file 2:

gag alignment. gag alignment of sequences generated in this study, sequences from GenBank and the draft pig genome

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Additional file 3:

pol alignment. pol alignment of sequences generated in this study, sequences from GenBank and the draft pig genome

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Additional file 4:

env A alignment. env A alignment of sequences generated in this study, sequences from GenBank and the draft pig genome

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Additional file 5:

env B alignment. env B alignment of sequences generated in this study, sequences from GenBank and the draft pig genome

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Additional file 6:

env C alignment. env C alignment of sequences generated in this study, sequences from GenBank and the draft pig genome

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Additional file 7:

env E alignment. env E alignment of sequences generated in this study, sequences from GenBank and the draft pig genome

Format: PDF Size: 72KB Download file

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Open Data