Additional file 3.

Figure S2: Absolute rates for the 1st+2nd versus 3rd codon positions for each partition. Three separate data sets are shown: among host subtype 1a (green), among host subtype 1b (blue) and within-host (red). Squares represent the rate of the 1st+2nd positions, circles the 3rd position. The symbols are offset within each partition for visual clarity only. Separate parameters were estimated for each of 21 partitions spanning the HCV coding region (see genome schematic and partition numbering at top of Figure).

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Gray et al. BMC Evolutionary Biology 2011 11:131   doi:10.1186/1471-2148-11-131