Table 2

Divergence process table of domain evolution from EamA

Domain halve distance (100-p)

Average distance (100-p) from EamA

Standard deviation of similarity (p) to EamA


EamA

0,6%

0,0%

0,0

TPT

3,1%

0,7%

0,7

DUF914

2,7%

1,0%

0,7

UAA

6,9%

1,3%

1,0

NST

96,6%

2,4%

2,0


Divergence process table showing increasing distance between DMT-1 and DMT-2, and increasing distance to EamA. The measurements are indicated in HHsearch probability and presented as (100-p) to convert similarity to distance. The domain halve distance is reported using DMT-1 as HMM query and DMT-2 as 'database'. The standard deviation is shown because each measurement in the EamA distance column represents the average of (DMT-1 to EamA-1; DMT-1 to EamA-2; DMT-2 to EamA-1; DMT-2 to EamA-2).

Västermark et al. BMC Evolutionary Biology 2011 11:123   doi:10.1186/1471-2148-11-123

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