Table 1

Number of DMT sequences returned in Pfam mining

EamA

TPT

DUF914

UAA

NST

DUF803

UPF0546

DUF1632

Zip

Cation efflux


Hsa

20 (20)

9 (9)

3 (3)

4 (4)

5 (5)

6 (6)

1 (1)

1 (1)

14 (14)

10 (10)

Mmu

12 (9)

9 (9)

3 (3)

4 (4)

5 (5)

6 (6)

1 (1)

1 (1)

14 (14)

10 (10)

Gga

7 (6)

9 (9)

3 (3)

4 (4)

5 (5)

8 (8)

1 (1)

1 (1)

8 (8)

12 (12)

Tru

11 (8)

10 (10)

4 (0)

4 (4)

6 (6)

6 (6)

0 (0)

0 (0)

14 (13)

12 (12)

Cin

16 (11)

6 (6)

3 (2)

4 (4)

3 (3)

3 (3)

0 (0)

0 (0)

8 (7)

7 (7)

Dme

5 (4)

4 (4)

0 (0)

5 (5)

3 (3)

1 (1)

1 (1)

0 (0)

11 (10)

7 (7)

Cel

1 (1)

6 (6)

1 (1)

5 (5)

9 (8)

1 (1)

1 (1)

6 (6)

15 (14)

12 (12)

Nve

16 (12)

8 (8)

1 (1)

4 (4)

6 (6)

3 (3)

1 (1)

0 (0)

20 (18)

13 (13)

Tad

22 (19)

7 (7)

3 (3)

4 (4)

3 (3)

2 (2)

1 (1)

0 (0)

10 (8)

5 (5)

Sce

7 (5)

4 (4)

0 (0)

4 (4)

0 (0)

0 (0)

0 (0)

0 (0)

5 (5)

5 (5)

Ddi

10 (7)

7 (7)

4 (4)

4 (4)

1 (1)

0 (0)

1 (1)

2 (2)

9 (7)

6 (5)

Ath

105 (67)

59 (59)

7 (5)

9 (9)

4 (4)

9 (9)

1 (1)

0 (0)

20 (18)

12 (12)


Table lists number of full-length sequences obtained from the mining of the model organism proteomes listed in [additional file 1: supplementary table S1], containing Pfam-A HMM hits to DMTs listed in [additional file 2: supplementary table S2]. The parenthesized numbers show the change of sequence counts after alignment editing. The species abbreviations are as follows: H. sapiens (Hsa), M. musculus (Mmu), G. gallus (Gga), T. rubripes (Tru), C. intestinalis (Cin), D. melanogaster (Dme), C. elegans (Cel), N. vectensis (Nve), T. adhaerens (Tad), S. cerevisiae (Sce), D. discoideum (Ddi), A. thaliana (Ath).

Västermark et al. BMC Evolutionary Biology 2011 11:123   doi:10.1186/1471-2148-11-123

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