Table 6

Results of allelic association between SNPs underlying peaks of nucleotide diversity and opsin expression in 18 Lake Malawi cichlid species

Polymorphism distance from TSS

Type

MAF1

r2

t-value

P-value


SWS1 -54

C*T

0.222

-0.279

-0.911

> 0.05

SWS2B -208

C*T

0.417

< 0.001

0.003

> 0.05

SWS2B -55

1 bp indel

0.444

0.240

0.789

> 0.05

SWS2A -224*

C*T

0.222

0.127

1.037

> 0.05

SWS2A -217*

8 bp indel

0.194

0.392

1.841

0.087

RH2B -308

C*G

0.167

-0.245

-0.893

> 0.05

RH2B -161

C*T

0.111

0.263

3.447

0.004

LWS -208

C*T

0.167

0.355

1.002

> 0.05

CNE-7 183

A*T

0.222

0.055

-0.673

> 0.05

CNE-7 570

C*T

0.417

0.608

2.237

0.041

SWS2B-UTR 197

A*C

0.306

0.349

1.264

> 0.05


* These polymorphisms interrupt CRX transcription factor binding sites

O'Quin et al. BMC Evolutionary Biology 2011 11:120   doi:10.1186/1471-2148-11-120

Open Data