Table 5

Polymorphism statistics for 8 candidate cis-regulatory regions in 18 Lake Malawi cichlid species

Opsin

Length (bp)

S1

s2

H3

π4

C5

TD6

CRX7


SWS1

1000

16

5

17

0.0020

0.983

-1.4424

1

SWS2B

694

2

1

3

0.0008

0.997

0.2951

0

SWS2A

1000

7

1

6

0.0010

0.992

-1.1518

2

RH2B

950

17

3

15

0.0022

0.982

-1.1050

2

LWS

956

12

2

11

0.0012

0.987

-1.2394

0

CNE 10

882

12

1

10

0.0021

0.986

-0.2311

0

SWS2B UTR

442

2

0

4

0.0013

0.995

0.4486

NA

LWS UTR*

436

1

0

2

0.0006

0.998

0.0298

NA


1 Total number of segregating sites

2 Total number of segregating sites that are singletons

3 Total number of haplotypes

4 Nucleotide diversity

5 Sequence conservation

6 Tajima's D

7 Total number of segregating sites that interrupt predicted CRX binding sites

* Statistics presented for in/del polymorphism

O'Quin et al. BMC Evolutionary Biology 2011 11:120   doi:10.1186/1471-2148-11-120

Open Data